Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20229850 . C A CCDS13777.1:NM_023004.5:c.806cGc>cTc_NP_075380.1:p.269R>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:246 A:269 126.0 0.56 H -52.0 -47.3 126.0 0.56 0.0 HOH
 2.666
 NH1
 O
ARG B:246 B:269 111.0 0.493 H -62.4 -42.4 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:246 A:269 110.0 0.489 H -54.6 -46.9 110.0 0.489 0.0 HOH
 3.983
 CD
 O
ARG B:246 B:269 117.0 0.52 H -59.5 -42.8 NA NA NA
ARG C:246 C:269 116.0 0.516 H -57.9 -45.2 NA NA NA
ARG D:246 D:269 115.0 0.511 H -52.2 -40.3 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 ARG A:246 A:269 95.0 0.422 H -59.8 -41.7 95.0 0.422 0.0 HOH
 7.486
 O
 O
ARG B:246 B:269 138.0 0.613 H -59.2 -42.2 138.0 0.613 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:243 A:269 130.0 0.578 H -43.4 -59.1 130.0 0.578 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:244 A:269 78.0 0.347 H -60.7 -44.1 78.0 0.347 0.0 ACY
ACY
HOH
 9.939
3.834
3.196
 NH2
NH2
NH2
 OXT
OXT
O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:246 A:269 117.0 0.52 H -56.6 -41.8 117.0 0.52 0.0 HOH
 4.385
 N
 O
ARG B:246 B:269 97.0 0.431 H -59.2 -44.5 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:246 A:269 120.0 0.533 H -64.5 -43.7 120.0 0.533 0.0 HOH
 7.024
 O
 O
ARG B:246 B:269 117.0 0.52 H -60.9 -43.6 117.0 0.52 0.0 HOH
 5.819
 N
 O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:246 A:269 92.0 0.409 H -57.6 -42.4 92.0 0.409 0.0 HOH
 1.752
 HH11
 O
ARG B:246 B:269 137.0 0.609 H -59.9 -42.8 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:246 A:269 99.0 0.44 H -60.9 -45.1 99.0 0.44 0.0
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:246 A:269 118.0 0.524 H -55.7 -46.8 80.0 0.356 0.168 D:Q99PI8:0.169
 CL
CL
CL
CL
HOH
 7.351
9.229
6.291
9.731
2.347
 C
NH1
C
NH1
NH1
 CL
CL
CL
CL
O
ARG B:246 B:269 123.0 0.547 H -57.8 -45.8 81.0 0.36 0.187 H:Q99PI8:0.187
 GOL
CL
CL
CL
CL
HOH
 9.906
7.336
9.538
6.346
9.700
2.791
 O
C
NH1
C
NH2
O
 O1
CL
CL
CL
CL
O
ARG C:246 C:269 111.0 0.493 H -57.8 -46.4 75.0 0.333 0.16 E:Q99PI8:0.16
 CL
CL
CL
CL
CL
HOH
 7.609
7.283
9.278
6.379
9.905
2.494
 NH2
C
NH2
C
NH2
NH2
 CL
CL
CL
CL
CL
O
ARG D:246 D:269 121.0 0.538 H -56.2 -46.5 75.0 0.333 0.205 B:Q99PI8:0.204
 CL
CL
CL
HOH
 9.051
6.224
7.234
2.618
 NH2
C
C
NE
 CL
CL
CL
O
ARG E:246 E:269 120.0 0.533 H -61.4 -45.3 73.0 0.324 0.209 F:Q99PI8:0.209
 CL
CL
CL
CL
HOH
 7.216
7.338
8.904
9.430
2.779
 NH2
C
NH2
NH2
NH1
 CL
CL
CL
CL
O
ARG F:246 F:269 127.0 0.564 H -58.9 -43.5 78.0 0.347 0.217 G:Q99PI8:0.218
 CL
CL
CL
CL
HOH
 7.367
9.568
7.771
9.572
2.782
 C
NH1
NH1
NH2
O
 CL
CL
CL
CL
O
ARG G:246 G:269 112.0 0.498 H -62.9 -46.5 69.0 0.307 0.191 C:Q99PI8:0.191
 CL
CL
CL
HOH
 8.847
9.574
7.298
2.919
 NH2
NH2
C
NH2
 CL
CL
CL
O
ARG H:246 H:269 122.0 0.542 H -57.9 -45.2 78.0 0.347 0.195 A:Q99PI8:0.196
 GOL
CL
CL
CL
CL
HOH
 3.651
8.357
9.185
7.408
7.220
3.134
 NH2
NH2
NH2
NH2
C
NH2
 C3
CL
CL
CL
CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 ARG C:243 A:269 87.0 0.387 H -48.2 -58.5 87.0 0.387 0.0
ARG F:243 D:269 35.0 NA H -59.5 -52.6 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 ARG A:245 A:269 91.0 0.404 H -57.6 -44.6 91.0 0.404 0.0 EDO
HOH
 6.707
2.620
 O
NH1
 O2
O
ARG B:245 B:269 90.0 0.4 H -59.1 -43.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ARG A:269 A:269 96.0 0.427 H -53.9 -44.9