Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20229856 . C A CCDS13777.1:NM_023004.5:c.800cGg>cTg_NP_075380.1:p.267R>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:244 A:267 42.0 0.187 G -70.1 -17.7 42.0 0.187 0.0 NAG
HOH
 9.549
2.836
 NH1
O
 O6
O
ARG B:244 B:267 30.0 0.133 G -67.6 -18.9 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:244 A:267 53.0 0.236 G -68.8 -20.0 53.0 0.236 0.0 NAG
HOH
 8.899
2.790
 NH1
O
 O6
O
ARG B:244 B:267 40.0 0.178 G -75.4 -22.1 NA NA NA
ARG C:244 C:267 58.0 0.258 G -71.9 -19.8 NA NA NA
ARG D:244 D:267 35.0 0.156 G -69.1 -23.1 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 ARG A:244 A:267 52.0 0.231 G -68.0 -21.5 52.0 0.231 0.0 NAG
HOH
 9.416
8.905
 NH1
N
 O6
O
ARG B:244 B:267 93.0 0.413 G -73.5 -20.7 93.0 0.413 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:241 A:267 132.0 0.587 G -58.5 -16.7 132.0 0.587 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:242 A:267 120.0 0.533 G -62.3 -18.1 120.0 0.533 0.0 ACY
HOH
 9.785
2.480
 N
O
 CH3
O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:244 A:267 43.0 0.191 G -70.1 -16.4 43.0 0.191 0.0 HOH
 2.674
 O
 O
ARG B:244 B:267 49.0 0.218 G -73.4 -18.2 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:244 A:267 42.0 0.187 G -69.8 -21.0 42.0 0.187 0.0 HOH
 7.648
 O
 O
ARG B:244 B:267 50.0 0.222 G -69.9 -18.4 50.0 0.222 0.0 NAG
HOH
 8.712
3.812
 NH1
O
 O6
O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:244 A:267 26.0 0.116 G -68.4 -16.1 26.0 0.116 0.0 NAG
HOH
 8.526
2.075
 HH12
HH11
 HO6
O
ARG B:244 B:267 32.0 0.142 G -69.3 -14.7 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:244 A:267 26.0 0.116 G -76.5 -16.9 26.0 0.116 0.0 NAG
NAG
CL
 8.700
8.870
6.645
 NH1
NH1
CB
 O6
C8
CL
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:244 A:267 19.0 0.084 G -68.2 -18.9 19.0 0.084 0.0 CL
CL
CL
HOH
 3.228
6.910
8.548
2.810
 NH1
O
O
O
 CL
CL
CL
O
ARG B:244 B:267 18.0 0.08 G -66.7 -17.3 18.0 0.08 0.0 CL
CL
HOH
 6.831
8.527
2.858
 O
O
O
 CL
CL
O
ARG C:244 C:267 27.0 0.12 G -69.4 -15.1 27.0 0.12 0.0 CL
CL
CL
CL
HOH
 4.706
3.247
6.886
8.677
2.757
 CA
NH1
O
O
O
 CL
CL
CL
CL
O
ARG D:244 D:267 13.0 0.058 G -72.7 -13.8 13.0 0.058 0.0 CL
CL
HOH
 8.886
7.190
2.827
 O
O
O
 CL
CL
O
ARG E:244 E:267 23.0 0.102 G -73.1 -14.5 23.0 0.102 0.0 CL
CL
HOH
 4.555
7.262
2.779
 CA
O
O
 CL
CL
O
ARG F:244 F:267 30.0 0.133 G -71.3 -15.4 30.0 0.133 0.0 CL
CL
HOH
 6.976
3.403
2.951
 O
NH1
O
 CL
CL
O
ARG G:244 G:267 23.0 0.102 G -69.5 -14.5 23.0 0.102 0.0 CL
CL
HOH
 3.225
7.310
2.752
 NH1
O
O
 CL
CL
O
ARG H:244 H:267 23.0 0.102 G -71.1 -16.1 23.0 0.102 0.0 GOL
CL
CL
HOH
 6.810
4.606
7.173
2.796
 N
CA
O
O
 C3
CL
CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 ARG C:241 A:267 102.0 0.453 T -69.7 -26.8 102.0 0.453 0.0
ARG F:241 D:267 101.0 0.449 G -53.7 -26.5 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 ARG A:243 A:267 130.0 0.578 G -65.2 -20.0 130.0 0.578 0.0 EDO
HOH
 8.083
2.808
 O
O
 C1
O
ARG B:243 B:267 130.0 0.578 G -66.3 -20.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ARG A:267 A:267 46.0 0.204 G -72.7 -22.4