Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20229869 . C A CCDS13777.1:NM_023004.5:c.787Gtg>Ttg_NP_075380.1:p.263V>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 VAL A:240 A:263 15.0 0.097 E -96.7 110.8 15.0 0.097 0.0 NAG
HOH
 9.676
2.723
 CG2
O
 O6
O
VAL B:240 B:263 11.0 0.071 E -98.0 110.6 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 VAL A:240 A:263 13.0 0.084 E -99.0 116.0 13.0 0.084 0.0 NAG
HOH
 9.093
6.851
 CG2
C
 O6
O
VAL B:240 B:263 14.0 0.09 E -91.7 113.3 NA NA NA
VAL C:240 C:263 14.0 0.09 E -99.5 105.7 NA NA NA
VAL D:240 D:263 15.0 0.097 E -107.0 98.4 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 VAL A:240 A:263 16.0 0.103 E -95.8 107.9 16.0 0.103 0.0 NAG
 9.446
 CG2
 O6
VAL B:240 B:263 20.0 0.129 E -100.9 114.1 20.0 0.129 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 VAL A:237 A:263 11.0 0.071 E -84.9 137.1 11.0 0.071 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 VAL A:238 A:263 22.0 0.142 E -101.9 115.8 22.0 0.142 0.0 ACY
HOH
 9.005
2.885
 CG1
O
 CH3
O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 VAL A:240 A:263 14.0 0.09 E -100.9 104.8 14.0 0.09 0.0 HOH
 2.792
 O
 O
VAL B:240 B:263 12.0 0.077 E -96.9 105.0 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 VAL A:240 A:263 17.0 0.11 E -92.7 113.7 17.0 0.11 0.0 HOH
 9.995
 N
 O
VAL B:240 B:263 23.0 0.148 E -105.2 107.6 23.0 0.148 0.0 NAG
HOH
 7.916
5.667
 CG2
O
 O6
O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 VAL A:240 A:263 12.0 0.077 E -97.4 111.0 12.0 0.077 0.0 NAG
HOH
 8.816
2.846
 HG23
O
 H1
O
VAL B:240 B:263 13.0 0.084 E -99.1 109.3 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 VAL A:240 A:263 16.0 0.103 E -105.4 114.8 16.0 0.103 0.0 NAG
NAG
 8.993
8.193
 CG2
CG2
 O6
C8
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 VAL A:240 A:263 8.0 0.052 E -96.4 110.1 8.0 0.052 0.0 CL
HOH
 5.678
2.648
 CG2
O
 CL
O
VAL B:240 B:263 3.0 0.019 E -102.7 110.8 3.0 0.019 0.0 HOH
 2.698
 O
 O
VAL C:240 C:263 8.0 0.052 E -106.1 110.6 8.0 0.052 0.0 CL
CL
HOH
 9.935
5.676
2.854
 O
CG2
O
 CL
CL
O
VAL D:240 D:263 2.0 0.013 E -98.1 112.7 2.0 0.013 0.0 HOH
 2.653
 O
 O
VAL E:240 E:263 14.0 0.09 E -104.1 112.3 14.0 0.09 0.0 CL
HOH
 9.777
2.975
 O
O
 CL
O
VAL F:240 F:263 12.0 0.077 E -99.4 112.0 12.0 0.077 0.0 CL
HOH
 5.730
2.871
 CG2
O
 CL
O
VAL G:240 G:263 7.0 0.045 E -101.7 114.5 7.0 0.045 0.0 CL
HOH
 5.829
2.724
 CG2
O
 CL
O
VAL H:240 H:263 10.0 0.065 E -102.1 110.1 10.0 0.065 0.0 CL
HOH
 9.854
2.861
 O
O
 CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 VAL C:237 A:263 19.0 0.123 B -97.1 107.9 19.0 0.123 0.0
VAL F:237 D:263 14.0 0.09 -79.3 -44.8 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 VAL A:239 A:263 24.0 0.155 E -100.2 122.0 24.0 0.155 0.0 HOH
 2.762
 O
 O
VAL B:239 B:263 27.0 0.174 E -100.6 124.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 VAL A:263 A:263 4.0 0.026 E -100.4 103.5