Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20229881 . C A CCDS13777.1:NM_023004.5:c.775Gac>Tac_NP_075380.1:p.259D>Y Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ASP A:236 A:259 113.0 0.753 S 52.5 52.7 113.0 0.753 0.0 NAG
HOH
 9.169
2.775
 O
N
 C8
O
ASP B:236 B:259 108.0 0.72 S 54.0 55.8 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ASP A:236 A:259 107.0 0.713 S 55.5 47.0 107.0 0.713 0.0 NAG
PO4
HOH
 8.673
3.236
3.020
 O
CB
N
 C8
O2
O
ASP B:236 B:259 106.0 0.707 S 50.0 49.2 NA NA NA
ASP C:236 C:259 111.0 0.74 S 52.6 54.9 NA NA NA
ASP D:236 D:259 114.0 0.76 S 55.5 50.3 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 ASP A:236 A:259 110.0 0.733 S 54.4 33.6 110.0 0.733 0.0 NAG
 8.026
 O
 O7
ASP B:236 B:259 114.0 0.76 S 53.8 44.4 114.0 0.76 0.0 GOL
HOH
 2.570
5.950
 OD2
OD2
 O3
O
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ASP A:233 A:259 111.0 0.74 S 62.9 52.4 111.0 0.74 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ASP A:234 A:259 107.0 0.713 S 57.1 48.2 107.0 0.713 0.0 HOH
 2.775
 OD2
 O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ASP A:236 A:259 107.0 0.713 S 53.1 49.3 107.0 0.713 0.0 NAG
HOH
 8.876
2.372
 O
OD1
 C8
O
ASP B:236 B:259 109.0 0.727 S 52.7 48.9 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ASP A:236 A:259 103.0 0.687 S 52.8 56.4 103.0 0.687 0.0 NAG
HOH
 3.086
2.773
 OD1
OD2
 O6
O
ASP B:236 B:259 107.0 0.713 S 52.7 50.0 27.0 0.18 0.533 A:Q99PI8:0.533
 NAG
HOH
 9.448
3.053
 O
O
 C1
O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ASP A:236 A:259 108.0 0.72 S 52.5 49.1 108.0 0.72 0.0 NAG
HOH
 8.456
2.231
 O
H
 H81
O
ASP B:236 B:259 108.0 0.72 S 54.7 46.6 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ASP A:236 A:259 102.0 0.68 S 51.3 60.4 102.0 0.68 0.0 NAG
HOH
 9.631
3.539
 O
OD2
 C8
O
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ASP A:236 A:259 108.0 0.72 S 51.0 49.3 108.0 0.72 0.0 NAG
GOL
CL
HOH
 6.125
4.096
5.502
2.486
 OD1
OD2
N
OD2
 O6
O2
CL
O
ASP B:236 B:259 104.0 0.693 S 55.4 48.9 104.0 0.693 0.0 NAG
CL
CL
HOH
 4.707
5.544
7.070
2.854
 OD1
N
N
OD2
 O6
CL
CL
O
ASP C:236 C:259 106.0 0.707 S 53.1 47.9 106.0 0.707 0.0 NAG
CL
HOH
 5.071
5.586
2.929
 OD2
N
O
 C8
CL
O
ASP D:236 D:259 108.0 0.72 S 51.5 49.9 108.0 0.72 0.0 NAG
GOL
CL
HOH
 5.217
4.347
5.626
2.979
 OD1
OD2
N
O
 O6
O2
CL
O
ASP E:236 E:259 104.0 0.693 S 51.6 53.3 104.0 0.693 0.0 NAG
CL
HOH
 5.988
5.633
2.390
 OD1
N
OD2
 C6
CL
O
ASP F:236 F:259 107.0 0.713 S 52.4 52.3 107.0 0.713 0.0 NAG
GOL
CL
CL
HOH
 5.453
4.725
5.498
7.134
2.761
 OD1
OD2
N
N
O
 O7
O2
CL
CL
O
ASP G:236 G:259 105.0 0.7 S 53.4 48.4 105.0 0.7 0.0 NAG
CL
HOH
 5.218
5.629
2.861
 OD1
N
O
 O6
CL
O
ASP H:236 H:259 108.0 0.72 S 53.5 49.7 108.0 0.72 0.0 NAG
GOL
CL
HOH
 5.377
4.588
5.640
2.838
 OD1
OD2
N
O
 O6
O2
CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 ASP C:233 A:259 107.0 0.713 S 22.7 65.0 107.0 0.713 0.0
ASP F:233 D:259 112.0 0.747 S 59.4 37.9 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 ASP A:235 A:259 104.0 0.693 S 51.5 52.3 104.0 0.693 0.0 FUC
HOH
 9.595
2.348
 OD2
OD2
 O2
O
ASP B:235 B:259 107.0 0.713 S 52.7 52.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ASP A:259 A:259 102.0 0.68 S 53.0 51.1