Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20229976 . C A CCDS13777.1:NM_023004.5:c.680cGc>cTc_NP_075380.1:p.227R>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:204 A:227 150.0 0.667 T -103.6 -0.5 150.0 0.667 0.0 NAG
HOH
 9.530
3.090
 NH2
N
 C1
O
ARG B:204 B:227 125.0 0.556 T -100.3 0.5 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:204 A:227 148.0 0.658 T -100.6 5.2 148.0 0.658 0.0 NAG
HOH
 9.473
2.941
 NH2
O
 O6
O
ARG B:204 B:227 159.0 0.707 T -104.1 9.9 NA NA NA
ARG C:204 C:227 150.0 0.667 T -101.0 10.6 NA NA NA
ARG D:204 D:227 146.0 0.649 T -105.6 8.1 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 ARG A:204 A:227 172.0 0.764 T -96.5 19.2 172.0 0.764 0.0 NAG
GOL
HOH
 8.119
9.936
2.596
 NE
O
NH1
 O6
O2
O
ARG B:204 B:227 160.0 0.711 S -106.3 19.8 160.0 0.711 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:201 A:227 166.0 0.738 T 66.1 -18.0 166.0 0.738 0.0 NDG
 6.643
 NH1
 O7
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:202 A:227 155.0 0.689 T -111.5 5.4 155.0 0.689 0.0 NAG
NDG
HOH
 9.191
9.963
2.699
 NH2
NH2
O
 C6
C8
O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:204 A:227 159.0 0.707 T -103.6 7.1 159.0 0.707 0.0 NAG
HOH
 9.875
3.122
 NH2
O
 O6
O
ARG B:204 B:227 141.0 0.627 T -104.6 5.4 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:204 A:227 154.0 0.684 T -105.0 6.4 154.0 0.684 0.0 HOH
 3.234
 N
 O
ARG B:204 B:227 132.0 0.587 T -94.2 11.9 132.0 0.587 0.0 NAG
HOH
 9.552
4.641
 NH1
NH1
 O6
O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:204 A:227 139.0 0.618 T -106.2 2.8 139.0 0.618 0.0 NAG
HOH
 6.376
2.515
 HH22
H
 H61
O
ARG B:204 B:227 137.0 0.609 T -109.7 9.3 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:204 A:227 164.0 0.729 T -98.2 9.4 164.0 0.729 0.0 NAG
HOH
 6.063
7.818
 NH1
NH1
 C8
O
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:204 A:227 156.0 0.693 T -104.6 6.2 94.0 0.418 0.275 H:Q99PI8:0.276
 NAG
CL
HOH
 8.851
8.834
2.820
 NE
O
O
 O6
CL
O
ARG B:204 B:227 141.0 0.627 T -104.0 2.4 89.0 0.396 0.231 D:Q99PI8:0.231
 CL
CL
CL
HOH
 7.267
3.131
8.857
2.752
 O
NH2
O
NH1
 CL
CL
CL
O
ARG C:204 C:227 137.0 0.609 T -102.2 -0.4 86.0 0.382 0.227 G:Q99PI8:0.227
 NAG
CL
CL
CL
HOH
 9.834
3.185
6.003
8.916
2.774
 NE
NH2
NH2
O
O
 C6
CL
CL
CL
O
ARG D:204 D:227 141.0 0.627 T -104.4 1.5 69.0 0.307 0.32 A:Q99PI8:0.32
 GOL
CL
NAG
CL
CL
HOH
 9.087
8.523
8.411
7.289
3.500
2.681
 O
O
NH2
O
NH2
O
 C3
CL
O6
CL
CL
O
ARG E:204 E:227 139.0 0.618 T -102.7 -0.9 52.0 0.231 0.387 C:Q99PI8:0.387
 CL
NAG
CL
HOH
 8.573
9.499
7.231
2.599
 O
NE
O
O
 CL
C6
CL
O
ARG F:204 F:227 141.0 0.627 T -105.8 3.7 91.0 0.404 0.223 E:Q99PI8:0.222
 CL
NAG
HOH
 9.023
8.744
2.657
 O
NE
O
 CL
O6
O
ARG G:204 G:227 145.0 0.644 T -101.6 1.6 63.0 0.28 0.364 F:Q99PI8:0.364
 CL
CL
NAG
HOH
 8.649
3.661
7.996
2.623
 O
NH2
NH2
O
 CL
CL
O6
O
ARG H:204 H:227 149.0 0.662 T -105.0 -4.3 101.0 0.449 0.213 B:Q99PI8:0.213
 GOL
CL
NAG
CL
HOH
 8.657
8.556
8.213
7.275
2.730
 O
O
CZ
O
O
 O3
CL
O6
CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 ARG C:201 A:227 161.0 0.716 T -84.9 7.4 161.0 0.716 0.0 NAG
 9.361
 CZ
 O6
ARG F:201 D:227 157.0 0.698 S -79.3 12.2 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 ARG A:203 A:227 151.0 0.671 T -102.9 1.7 151.0 0.671 0.0 NAG
HOH
 7.107
2.307
 NH2
NE
 C6
O
ARG B:203 B:227 145.0 0.644 T -102.0 1.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ARG A:227 A:227 162.0 0.72 T -99.1 -1.3