Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230097 . C A CCDS13777.1:NM_023004.5:c.559Ggc>Tgc_NP_075380.1:p.187G>C Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 GLY A:164 A:187 22.0 0.293 S 69.0 40.8 22.0 0.293 0.0 HOH
 4.255
 C
 O
GLY B:164 B:187 22.0 0.293 S 71.1 39.9 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 GLY A:164 A:187 17.0 0.227 S 68.1 44.3 17.0 0.227 0.0 HOH
 3.955
 CA
 O
GLY B:164 B:187 20.0 0.267 S 70.1 21.4 NA NA NA
GLY C:164 C:187 18.0 0.24 S 74.7 33.9 NA NA NA
GLY D:164 D:187 12.0 0.16 S 79.0 39.6 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 GLY A:164 A:187 19.0 0.253 T 77.0 10.2 19.0 0.253 0.0 CL
 9.048
 O
 CL
GLY B:164 B:187 20.0 0.267 T 86.8 18.9 20.0 0.267 0.0 HOH
 8.662
 C
 O
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 GLY A:161 A:187 22.0 0.293 T 79.6 7.6 22.0 0.293 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 GLY A:162 A:187 22.0 0.293 S 74.1 32.1 22.0 0.293 0.0 HOH
 3.202
 O
 O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 GLY A:164 A:187 18.0 0.24 S 70.9 38.0 18.0 0.24 0.0 HOH
 3.547
 CA
 O
GLY B:164 B:187 21.0 0.28 S 69.8 38.0 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 GLY A:164 A:187 17.0 0.227 S 80.4 38.4 17.0 0.227 0.0 HOH
 3.166
 O
 O
GLY B:164 B:187 22.0 0.293 T 84.2 20.9 15.0 0.2 0.093 A:Q99PI8:0.093
 CL
CL
HOH
 4.113
5.783
6.174
 CA
CA
N
 CL
CL
O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 GLY A:164 A:187 18.0 0.24 S 74.2 35.4 18.0 0.24 0.0 HOH
 3.012
 HA2
 O
GLY B:164 B:187 20.0 0.267 S 74.6 36.4 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 GLY A:164 A:187 21.0 0.28 S 77.3 31.5 21.0 0.28 0.0
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 GLY A:164 A:187 21.0 0.28 S 71.3 27.1 21.0 0.28 0.0 GOL
CL
CL
HOH
 6.431
8.361
6.010
2.810
 CA
N
N
O
 O1
CL
CL
O
GLY B:164 B:187 20.0 0.267 S 70.1 32.2 20.0 0.267 0.0 CL
CL
HOH
 8.274
5.942
2.689
 N
N
O
 CL
CL
O
GLY C:164 C:187 19.0 0.253 S 72.3 29.4 19.0 0.253 0.0 NAG
CL
CL
HOH
 8.721
8.335
6.023
3.243
 CA
N
N
O
 O7
CL
CL
O
GLY D:164 D:187 19.0 0.253 S 73.8 30.4 19.0 0.253 0.0 GOL
CL
CL
HOH
 6.342
8.465
5.947
3.029
 CA
N
N
O
 O1
CL
CL
O
GLY E:164 E:187 20.0 0.267 S 68.0 33.0 20.0 0.267 0.0 CL
CL
HOH
 8.354
5.949
3.002
 N
N
O
 CL
CL
O
GLY F:164 F:187 19.0 0.253 S 70.0 34.3 19.0 0.253 0.0 GOL
CL
CL
HOH
 6.594
8.350
5.957
3.126
 CA
N
N
O
 O3
CL
CL
O
GLY G:164 G:187 18.0 0.24 S 69.7 33.1 18.0 0.24 0.0 CL
CL
CL
HOH
 8.296
7.608
5.899
2.947
 N
N
N
O
 CL
CL
CL
O
GLY H:164 H:187 20.0 0.267 S 71.7 33.3 20.0 0.267 0.0 GOL
CL
CL
HOH
 5.902
8.542
5.892
3.065
 CA
N
N
O
 O1
CL
CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 GLY C:161 A:187 19.0 0.253 S 57.6 50.3 19.0 0.253 0.0
GLY F:161 D:187 21.0 0.28 S 72.7 41.2 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 GLY A:163 A:187 21.0 0.28 S 76.7 34.5 21.0 0.28 0.0 FUC
BGC
EDO
HOH
 6.688
8.126
6.605
2.634
 N
CA
CA
O
 O4
O2
C1
O
GLY B:163 B:187 17.0 0.227 S 76.9 34.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 GLY A:187 A:187 21.0 0.28 S 67.0 31.5