Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230106 . A C CCDS13777.1:NM_023004.5:c.550Ttc>Gtc_NP_075380.1:p.184F>V Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 PHE A:161 A:184 27.0 0.129 E -106.6 112.5 27.0 0.129 0.0 HOH
 3.831
 CZ
 O
PHE B:161 B:184 19.0 0.09 E -110.2 112.3 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 PHE A:161 A:184 22.0 0.105 E -104.1 111.3 22.0 0.105 0.0 HOH
 3.262
 CZ
 O
PHE B:161 B:184 22.0 0.105 E -106.4 114.8 NA NA NA
PHE C:161 C:184 21.0 0.1 E -111.8 103.4 NA NA NA
PHE D:161 D:184 24.0 0.114 E -102.6 109.7 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 PHE A:161 A:184 15.0 0.071 E -107.2 113.6 15.0 0.071 0.0 GOL
HOH
 6.515
5.959
 CZ
CZ
 O3
O
PHE B:161 B:184 16.0 0.076 E -113.8 108.5 16.0 0.076 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 PHE A:158 A:184 28.0 0.133 E -106.6 120.0 28.0 0.133 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 PHE A:159 A:184 26.0 0.124 E -106.3 115.9 26.0 0.124 0.0 HOH
 3.391
 CZ
 O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 PHE A:161 A:184 30.0 0.143 E -105.9 111.1 30.0 0.143 0.0 HOH
 3.894
 CZ
 O
PHE B:161 B:184 19.0 0.09 E -105.2 111.6 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 PHE A:161 A:184 24.0 0.114 E -115.3 108.5 0.0 0.0 0.114 B:Q99PI8:0.114
 HOH
 3.394
 CZ
 O
PHE B:161 B:184 23.0 0.11 E -103.1 115.1 23.0 0.11 0.0 HOH
 3.240
 CB
 O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 PHE A:161 A:184 21.0 0.1 E -106.9 114.1 21.0 0.1 0.0 HOH
 3.040
 HZ
 O
PHE B:161 B:184 21.0 0.1 E -107.6 112.2 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 PHE A:161 A:184 36.0 0.171 E -105.0 112.3 36.0 0.171 0.0 CL
 8.639
 CE2
 CL
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 PHE A:161 A:184 29.0 0.138 E -108.9 118.6 29.0 0.138 0.0 GOL
CL
CL
CL
HOH
 3.850
6.624
3.405
7.674
3.486
 CE1
CD1
CB
CZ
CD1
 O3
CL
CL
CL
O
PHE B:161 B:184 26.0 0.124 E -108.6 116.9 26.0 0.124 0.0 CL
CL
CL
HOH
 6.802
3.457
8.405
3.491
 CD1
CB
CZ
CZ
 CL
CL
CL
O
PHE C:161 C:184 26.0 0.124 E -111.9 116.7 26.0 0.124 0.0 CL
CL
HOH
 6.870
3.417
3.662
 CB
CB
CZ
 CL
CL
O
PHE D:161 D:184 26.0 0.124 E -106.9 118.2 26.0 0.124 0.0 CL
CL
CL
HOH
 6.811
8.521
3.344
3.665
 CD1
CE1
CB
CZ
 CL
CL
CL
O
PHE E:161 E:184 30.0 0.143 E -104.9 115.2 30.0 0.143 0.0 CL
CL
CL
CL
HOH
 7.784
6.846
8.774
3.443
3.358
 CZ
CD1
CE1
CB
CZ
 CL
CL
CL
CL
O
PHE F:161 F:184 23.0 0.11 E -112.0 112.9 23.0 0.11 0.0 CL
CL
CL
HOH
 7.731
6.919
3.523
3.624
 CZ
CD1
CB
CZ
 CL
CL
CL
O
PHE G:161 G:184 28.0 0.133 E -110.1 115.4 27.0 0.129 0.004 F:Q99PI8:0.005
 CL
CL
CL
HOH
 6.827
8.051
3.453
3.791
 CD1
CD1
CB
CZ
 CL
CL
CL
O
PHE H:161 H:184 29.0 0.138 E -108.0 110.3 29.0 0.138 0.0 CL
CL
CL
HOH
 6.859
8.630
3.469
3.589
 CD2
CZ
CB
CZ
 CL
CL
CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 PHE C:158 A:184 32.0 0.152 E -113.7 114.9 32.0 0.152 0.0
PHE F:158 D:184 32.0 0.152 E -121.9 112.4 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 PHE A:160 A:184 37.0 0.176 E -105.3 120.0 6.0 0.029 0.147 C:Q3UHD1:0.148
 FUC
EDO
EDO
HOH
 5.703
5.476
9.315
3.679
 CD2
CD2
CZ
CE2
 C6
O2
O1
O
PHE B:160 B:184 36.0 0.171 E -106.3 119.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 PHE A:184 A:184 12.0 0.057 E -108.1 110.9