Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230126 . A C CCDS13777.1:NM_023004.5:c.530cTg>cGg_NP_075380.1:p.177L>R Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 LEU A:154 A:177 0.0 0.0 -89.6 61.5 0.0 0.0 0.0 NAG
HOH
 8.198
3.050
 C
O
 C8
O
LEU B:154 B:177 0.0 0.0 -90.2 60.9 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 LEU A:154 A:177 0.0 0.0 -91.4 57.8 0.0 0.0 0.0 NAG
PO4
HOH
 8.355
8.232
3.093
 C
N
C
 C1
O1
O
LEU B:154 B:177 0.0 0.0 -87.3 63.4 NA NA NA
LEU C:154 C:177 0.0 0.0 -83.4 63.4 NA NA NA
LEU D:154 D:177 0.0 0.0 -80.1 62.9 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 LEU A:154 A:177 0.0 0.0 -85.1 62.1 0.0 0.0 0.0 NAG
HOH
 8.735
6.767
 C
N
 C1
O
LEU B:154 B:177 0.0 0.0 -81.5 74.7 0.0 0.0 0.0 NAG
 8.095
 C
 C1
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 LEU A:151 A:177 0.0 0.0 -69.1 81.5 0.0 0.0 0.0 NDG
 8.497
 C
 O5
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 LEU A:152 A:177 0.0 0.0 -89.2 61.8 0.0 0.0 0.0 NAG
HOH
 8.297
2.928
 C
O
 C1
O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 LEU A:154 A:177 0.0 0.0 -84.9 60.8 0.0 0.0 0.0 NAG
HOH
 8.197
2.913
 C
O
 C8
O
LEU B:154 B:177 0.0 0.0 -86.7 59.0 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 LEU A:154 A:177 0.0 0.0 -87.1 58.6 0.0 0.0 0.0 NAG
HOH
 8.499
2.901
 C
O
 C1
O
LEU B:154 B:177 0.0 0.0 -83.3 61.9 0.0 0.0 0.0 NAG
HOH
 8.542
2.697
 C
O
 C8
O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 LEU A:154 A:177 0.0 0.0 -90.1 61.3 0.0 0.0 0.0 NAG
HOH
 7.235
2.486
 HA
HA
 H82
O
LEU B:154 B:177 0.0 0.0 -91.8 58.7 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 LEU A:154 A:177 0.0 0.0 -94.8 66.8 0.0 0.0 0.0 NAG
HOH
 5.953
2.799
 C
O
 O7
O
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 LEU A:154 A:177 0.0 0.0 -88.6 58.4 0.0 0.0 0.0 NAG
HOH
 8.554
2.967
 C
O
 C1
O
LEU B:154 B:177 0.0 0.0 -83.8 57.9 0.0 0.0 0.0 NAG
HOH
 8.098
2.805
 C
O
 C8
O
LEU C:154 C:177 0.0 0.0 -84.2 59.6 0.0 0.0 0.0 NAG
HOH
 8.537
2.911
 C
O
 C1
O
LEU D:154 D:177 0.0 0.0 -86.6 56.9 0.0 0.0 0.0 NAG
HOH
 8.542
2.993
 C
O
 C1
O
LEU E:154 E:177 0.0 0.0 -86.0 59.7 0.0 0.0 0.0 NAG
HOH
 8.579
2.918
 C
O
 C1
O
LEU F:154 F:177 0.0 0.0 -83.6 62.1 0.0 0.0 0.0 NAG
HOH
 8.615
2.854
 C
O
 C1
O
LEU G:154 G:177 0.0 0.0 -84.4 55.9 0.0 0.0 0.0 NAG
HOH
 8.525
3.038
 C
O
 C1
O
LEU H:154 H:177 0.0 0.0 -88.5 56.7 0.0 0.0 0.0 NAG
HOH
 8.202
2.790
 C
O
 C8
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 LEU C:151 A:177 0.0 0.0 -92.4 63.2 0.0 0.0 0.0 NAG
 8.849
 C
 O5
LEU F:151 D:177 0.0 0.0 -91.6 67.3 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 LEU A:153 A:177 0.0 0.0 -91.0 59.5 0.0 0.0 0.0 NAG
EDO
HOH
 8.352
8.496
2.965
 C
CD2
O
 C1
O2
O
LEU B:153 B:177 0.0 0.0 -89.1 59.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 LEU A:177 A:177 0.0 0.0 -85.2 49.8