Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230140 . G A CCDS13777.1:NM_023004.5:c.516gaC>gaT_NP_075380.1:p.172D>D Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ASN A:149 A:172 45.0 0.281 T 72.6 18.2 45.0 0.281 0.0 HOH
 3.208
 CA
 O
ASN B:149 B:172 46.0 0.287 T 66.8 13.4 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ASN A:149 A:172 63.0 0.394 T 63.2 16.6 63.0 0.394 0.0 PO4
HOH
 7.125
3.115
 OD1
C
 O2
O
ASN B:149 B:172 61.0 0.381 T 63.5 18.2 NA NA NA
ASN C:149 C:172 56.0 0.35 T 65.3 13.0 NA NA NA
ASN D:149 D:172 46.0 0.287 T 64.4 14.8 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 ASN A:149 A:172 46.0 0.287 T 63.4 19.8 30.0 0.188 0.099 B:Q99PI8:0.1
 CL
HOH
 5.352
3.269
 ND2
C
 CL
O
ASN B:149 B:172 68.0 0.425 T 61.3 20.1 45.0 0.281 0.144 A:Q99PI8:0.144
 CL
HOH
 8.508
6.269
 N
ND2
 CL
O
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ASP A:146 A:172 56.0 0.373 T 51.2 22.9 56.0 0.373 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ASP A:147 A:172 54.0 0.36 T 59.5 19.5 54.0 0.36 0.0 HOH
 2.604
 OD2
 O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ASN A:149 A:172 72.0 0.45 T 60.2 25.3 72.0 0.45 0.0 CL
HOH
 8.664
2.672
 OD1
ND2
 CL
O
ASN B:149 B:172 67.0 0.419 T 60.0 25.1 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ASN A:149 A:172 47.0 0.294 T 58.9 19.8 47.0 0.294 0.0 HOH
 3.269
 CA
 O
ASN B:149 B:172 40.0 0.25 T 56.6 30.3 40.0 0.25 0.0 HOH
 8.827
 O
 O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ASN A:149 A:172 60.0 0.375 T 66.3 17.1 60.0 0.375 0.0 HOH
 2.552
 HA
 O
ASN B:149 B:172 42.0 0.263 T 64.0 17.2 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ASN A:149 A:172 50.0 0.312 T 59.2 28.0 50.0 0.312 0.0 HOH
 3.667
 O
 O
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ASN A:149 A:172 42.0 0.263 T 69.4 14.6 42.0 0.263 0.0 CL
HOH
 6.452
3.205
 OD1
C
 CL
O
ASN B:149 B:172 44.0 0.275 T 66.5 15.0 44.0 0.275 0.0 HOH
 2.724
 ND2
 O
ASN C:149 C:172 44.0 0.275 T 65.6 18.0 44.0 0.275 0.0 HOH
 3.175
 ND2
 O
ASN D:149 D:172 44.0 0.275 T 69.6 14.1 44.0 0.275 0.0 HOH
 3.132
 ND2
 O
ASN E:149 E:172 44.0 0.275 T 68.5 15.6 44.0 0.275 0.0 HOH
 3.176
 CA
 O
ASN F:149 F:172 40.0 0.25 T 67.9 16.8 40.0 0.25 0.0 CL
HOH
 9.732
3.063
 N
O
 CL
O
ASN G:149 G:172 39.0 0.244 T 62.9 19.1 39.0 0.244 0.0 HOH
 2.891
 ND2
 O
ASN H:149 H:172 40.0 0.25 T 67.1 24.1 40.0 0.25 0.0 HOH
 3.233
 CA
 O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 ASN C:146 A:172 68.0 0.425 T 50.8 16.3 68.0 0.425 0.0
ASN F:146 D:172 61.0 0.381 T 55.4 28.4 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 ASN A:148 A:172 60.0 0.375 T 71.3 14.7 60.0 0.375 0.0 PG4
HOH
 8.405
3.232
 N
CA
 C6
O
ASN B:148 B:172 57.0 0.356 T 70.0 14.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ASP A:172 A:172 38.0 0.253 T 61.8 10.6