Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230216 . G A CCDS13777.1:NM_023004.5:c.440cCg>cTg_NP_075380.1:p.147P>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 PRO A:124 A:147 122.0 0.841 T -54.3 119.1 122.0 0.841 0.0 HOH
 4.288
 N
 O
PRO B:124 B:147 121.0 0.834 T -53.4 126.3 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 PRO A:124 A:147 125.0 0.862 T -61.7 136.9 125.0 0.862 0.0 HOH
 4.438
 CA
 O
PRO B:124 B:147 122.0 0.841 T -67.6 123.6 NA NA NA
PRO C:124 C:147 120.0 0.828 T -59.5 133.6 NA NA NA
PRO D:124 D:147 123.0 0.848 T -54.6 128.5 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 PRO A:124 A:147 110.0 0.759 T -65.6 130.3 51.0 0.352 0.407 B:Q99PI8:0.407
 HOH
 9.440
 C
 O
PRO B:124 B:147 122.0 0.841 T -69.5 124.2 62.0 0.428 0.413 A:Q99PI8:0.414
 HOH
 7.919
 CB
 O
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 PRO A:121 A:147 124.0 0.855 T -29.0 -94.2 124.0 0.855 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 PRO A:122 A:147 116.0 0.8 T -60.0 117.5 116.0 0.8 0.0 HOH
 2.549
 O
 O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 PRO A:124 A:147 124.0 0.855 T -57.5 121.7 124.0 0.855 0.0 HOH
 2.789
 O
 O
PRO B:124 B:147 119.0 0.821 T -59.2 123.2 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 PRO A:124 A:147 125.0 0.862 T -61.7 128.4 125.0 0.862 0.0 HOH
 4.287
 CA
 O
PRO B:124 B:147 116.0 0.8 T -65.5 133.7 116.0 0.8 0.0 HOH
 7.884
 O
 O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 PRO A:124 A:147 109.0 0.752 T -60.3 119.7 109.0 0.752 0.0 HOH
 2.602
 HB2
 O
PRO B:124 B:147 111.0 0.766 T -63.7 121.5 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 PRO A:124 A:147 125.0 0.862 T -57.2 115.8 125.0 0.862 0.0 HOH
 3.740
 CA
 O
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 PRO A:124 A:147 123.0 0.848 T -63.3 122.3 123.0 0.848 0.0 HOH
 3.529
 CD
 O
PRO B:124 B:147 123.0 0.848 T -60.9 123.6 123.0 0.848 0.0 HOH
 3.914
 C
 O
PRO C:124 C:147 123.0 0.848 T -59.7 125.4 123.0 0.848 0.0 HOH
 3.558
 N
 O
PRO D:124 D:147 125.0 0.862 T -63.5 123.7 125.0 0.862 0.0 NAG
HOH
 6.836
3.337
 CG
CD
 O6
O
PRO E:124 E:147 127.0 0.876 T -62.6 124.2 127.0 0.876 0.0 NAG
HOH
 7.335
3.968
 O
CA
 C6
O
PRO F:124 F:147 120.0 0.828 T -57.5 126.0 120.0 0.828 0.0 HOH
 2.850
 O
 O
PRO G:124 G:147 126.0 0.869 T -65.6 124.2 126.0 0.869 0.0 NAG
HOH
 7.502
3.300
 O
CA
 O6
O
PRO H:124 H:147 124.0 0.855 T -62.2 128.9 124.0 0.855 0.0 NAG
HOH
 7.708
4.252
 O
CA
 O6
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 PRO C:121 A:147 113.0 0.779 T -59.8 117.4 113.0 0.779 0.0
PRO F:121 D:147 118.0 0.814 T -56.0 120.7 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 PRO A:123 A:147 115.0 0.793 T -59.0 128.4 115.0 0.793 0.0 PG4
EDO
HOH
 8.328
8.589
3.065
 CD
O
O
 O5
O2
O
PRO B:123 B:147 111.0 0.766 T -59.5 127.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 PRO A:147 A:147 122.0 0.841 T -58.4 121.6