Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230264 . C A CCDS13777.1:NM_023004.5:c.392cGc>cTc_NP_075380.1:p.131R>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 HIS A:108 A:131 91.0 0.467 T -111.2 2.3 91.0 0.467 0.0 NAG
HOH
 6.943
2.942
 CA
N
 O7
O
HIS B:108 B:131 94.0 0.482 T -107.5 1.7 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 HIS A:108 A:131 93.0 0.477 T -108.6 3.6 93.0 0.477 0.0 NAG
HOH
 6.388
6.315
 CA
O
 C8
O
HIS B:108 B:131 91.0 0.467 T -106.7 5.6 NA NA NA
HIS C:108 C:131 90.0 0.462 T -99.7 2.3 NA NA NA
HIS D:108 D:131 96.0 0.492 T -107.1 7.4 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 HIS A:108 A:131 96.0 0.492 T -103.3 3.4 96.0 0.492 0.0 NAG
 7.083
 CA
 O7
HIS B:108 B:131 96.0 0.492 T -114.3 3.5 96.0 0.492 0.0 NAG
 5.518
 O
 C8
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:105 A:131 166.0 0.738 T -68.2 -1.8 166.0 0.738 0.0 NAG
NDG
 9.775
6.320
 NH1
CA
 O1
O6
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:106 A:131 135.0 0.6 T -108.6 1.3 135.0 0.6 0.0 NAG
NDG
HOH
 6.109
9.478
2.866
 CA
NH2
N
 O7
O6
O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 HIS A:108 A:131 93.0 0.477 T -107.7 1.7 93.0 0.477 0.0 NAG
HOH
 7.134
2.990
 CA
N
 O7
O
HIS B:108 B:131 87.0 0.446 T -109.4 4.4 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 HIS A:108 A:131 91.0 0.467 T -104.3 3.0 91.0 0.467 0.0 NAG
HOH
 6.469
2.875
 CA
N
 O7
O
HIS B:108 B:131 90.0 0.462 T -108.2 4.5 90.0 0.462 0.0 NAG
HOH
 6.693
3.922
 CA
N
 O7
O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 HIS A:108 A:131 91.0 0.467 T -107.5 1.9 91.0 0.467 0.0 NAG
HOH
 4.925
2.152
 HA
H
 H81
O
HIS B:108 B:131 93.0 0.477 T -107.9 4.9 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 HIS A:108 A:131 100.0 0.513 T -113.9 -6.9 100.0 0.513 0.0 NAG
NAG
MAN
HOH
 6.150
6.321
7.901
9.338
 ND1
CE1
CE1
C
 O6
O7
O6
O
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 HIS A:108 A:131 96.0 0.492 T -109.0 5.2 73.0 0.374 0.118 G:Q99PI8:0.118
 NAG
CL
HOH
 6.465
9.956
2.814
 ND1
O
N
 C8
CL
O
HIS B:108 B:131 103.0 0.528 T -110.8 3.6 79.0 0.405 0.123 E:Q99PI8:0.123
 NAG
HOH
 7.400
2.826
 CA
N
 O7
O
HIS C:108 C:131 105.0 0.538 T -111.3 1.5 73.0 0.374 0.164 H:Q99PI8:0.164
 NAG
CL
HOH
 6.144
9.866
2.735
 ND1
O
N
 O7
CL
O
HIS D:108 D:131 91.0 0.467 T -106.5 -1.1 75.0 0.385 0.082 F:Q99PI8:0.082
 NAG
HOH
 6.673
2.914
 CA
N
 O7
O
HIS E:108 E:131 91.0 0.467 T -98.7 0.3 72.0 0.369 0.098 B:Q99PI8:0.097
 NAG
HOH
 6.780
2.980
 CA
CD2
 O7
O
HIS F:108 F:131 108.0 0.554 T -110.7 6.8 78.0 0.4 0.154 D:Q99PI8:0.154
 NAG
CL
HOH
 6.405
9.777
2.793
 CD2
O
N
 O7
CL
O
HIS G:108 G:131 91.0 0.467 T -106.4 -2.5 72.0 0.369 0.098 A:Q99PI8:0.097
 NAG
HOH
 6.665
2.905
 CA
N
 O7
O
HIS H:108 H:131 92.0 0.472 T -99.7 -1.8 78.0 0.4 0.072 C:Q99PI8:0.072
 CL
NAG
HOH
 7.417
8.853
2.891
 O
CA
N
 CL
N2
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 HIS C:105 A:131 121.0 0.621 T -98.2 39.3 121.0 0.621 0.0 NAG
 4.586
 ND1
 O7
HIS F:105 D:131 122.0 0.626 T -102.6 40.8 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 HIS A:107 A:131 89.0 0.456 T -104.6 3.9 89.0 0.456 0.0 NAG
EDO
HOH
 6.217
7.810
2.844
 CA
N
N
 C8
O2
O
HIS B:107 B:131 93.0 0.477 T -105.2 3.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ARG A:131 A:131 136.0 0.604 T -106.8 3.3