Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230286 . C A CCDS13777.1:NM_023004.5:c.370Gcc>Tcc_NP_075380.1:p.124A>S Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 THR A:101 A:124 63.0 0.45 T -100.6 3.4 63.0 0.45 0.0 HOH
 3.368
 C
 O
THR B:101 B:124 67.0 0.479 T -111.4 17.5 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 THR A:101 A:124 72.0 0.514 T -94.1 -2.2 72.0 0.514 0.0 GOL
HOH
 6.916
3.489
 CB
C
 O2
O
THR B:101 B:124 68.0 0.486 T -115.7 10.8 NA NA NA
THR C:101 C:124 71.0 0.507 T -103.7 -2.7 NA NA NA
THR D:101 D:124 71.0 0.507 T -102.1 -1.1 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 THR A:101 A:124 61.0 0.436 T -100.5 6.2 51.0 0.364 0.072 B:Q99PI8:0.071
THR B:101 B:124 65.0 0.464 T -100.6 9.6 63.0 0.45 0.014 A:Q99PI8:0.014
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ALA A:98 A:124 45.0 0.391 T -86.5 3.9 45.0 0.391 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ALA A:99 A:124 41.0 0.357 T -96.1 -3.7 41.0 0.357 0.0 HOH
 2.958
 O
 O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 THR A:101 A:124 71.0 0.507 T -102.2 -7.3 71.0 0.507 0.0 HOH
 3.012
 O
 O
THR B:101 B:124 61.0 0.436 T -106.3 4.4 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 THR A:101 A:124 67.0 0.479 T -97.4 10.6 67.0 0.479 0.0 HOH
 3.059
 OG1
 O
THR B:101 B:124 68.0 0.486 T -100.3 15.3 68.0 0.486 0.0 HOH
 3.791
 CG2
 O
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 THR A:101 A:124 63.0 0.45 T -102.0 0.2 63.0 0.45 0.0 HOH
 2.690
 HG23
 O
THR B:101 B:124 61.0 0.436 T -101.9 2.0 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 THR A:101 A:124 71.0 0.507 T -105.8 13.3 71.0 0.507 0.0
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 THR A:101 A:124 66.0 0.471 T -101.6 0.4 57.0 0.407 0.064 G:Q99PI8:0.064
 HOH
 2.690
 OG1
 O
THR B:101 B:124 65.0 0.464 T -102.2 -0.9 57.0 0.407 0.057 E:Q99PI8:0.057
 HOH
 3.312
 O
 O
THR C:101 C:124 64.0 0.457 T -101.7 -0.1 58.0 0.414 0.043 H:Q99PI8:0.043
 HOH
 3.051
 OG1
 O
THR D:101 D:124 68.0 0.486 T -106.1 -0.4 11.0 0.079 0.407 F:Q99PI8:0.407
 NAG
HOH
 5.678
3.274
 CG2
C
 C1
O
THR E:101 E:124 67.0 0.479 T -108.4 3.6 13.0 0.093 0.386 B:Q99PI8:0.386
 NAG
HOH
 4.939
3.299
 OG1
C
 O7
O
THR F:101 F:124 66.0 0.471 T -106.7 5.9 56.0 0.4 0.071 D:Q99PI8:0.071
 HOH
 2.657
 OG1
 O
THR G:101 G:124 66.0 0.471 T -107.0 1.8 12.0 0.086 0.385 A:Q99PI8:0.386
 NAG
HOH
 5.682
3.345
 CG2
C
 C1
O
THR H:101 H:124 66.0 0.471 T -108.5 -0.5 11.0 0.079 0.392 C:Q99PI8:0.393
 NAG
HOH
 5.804
3.190
 CG2
C
 C1
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 THR C:98 A:124 63.0 0.45 T -99.2 -2.1 63.0 0.45 0.0
THR F:98 D:124 58.0 0.414 T -110.4 8.4 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 THR A:100 A:124 65.0 0.464 T -101.2 6.1 65.0 0.464 0.0 EDO
EDO
HOH
 6.938
3.632
3.383
 O
OG1
C
 C1
C1
O
THR B:100 B:124 64.0 0.457 T -103.5 5.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ALA A:124 A:124 36.0 0.313 T -85.2 -7.8