Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230301 . G A CCDS13777.1:NM_023004.5:c.355Cgg>Tgg_NP_075380.1:p.119R>W Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 HIS A:96 A:119 48.0 0.246 61.6 -40.9 48.0 0.246 0.0 HOH
 3.215
 ND1
 O
HIS B:96 B:119 45.0 0.231 71.7 -42.6 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 HIS A:96 A:119 54.0 0.277 71.9 -47.4 54.0 0.277 0.0 HOH
 3.424
 ND1
 O
HIS B:96 B:119 55.0 0.282 66.2 -48.2 NA NA NA
HIS C:96 C:119 53.0 0.272 75.3 -43.8 NA NA NA
HIS D:96 D:119 57.0 0.292 69.4 -52.1 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 HIS A:96 A:119 57.0 0.292 70.4 -51.4 57.0 0.292 0.0
HIS B:96 B:119 57.0 0.292 72.4 -42.4 57.0 0.292 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:93 A:119 138.0 0.613 56.9 -23.1 138.0 0.613 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:94 A:119 147.0 0.653 63.5 -40.7 147.0 0.653 0.0 HOH
 2.675
 NH1
 O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 HIS A:96 A:119 50.0 0.256 65.8 -50.7 50.0 0.256 0.0 HOH
 3.694
 CD2
 O
HIS B:96 B:119 52.0 0.267 64.9 -48.5 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 HIS A:96 A:119 46.0 0.236 71.1 -49.0 46.0 0.236 0.0 CL
HOH
 4.176
4.702
 CE1
CB
 CL
O
HIS B:96 B:119 71.0 0.364 66.5 -55.7 71.0 0.364 0.0
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 HIS A:96 A:119 52.0 0.267 70.9 -44.9 52.0 0.267 0.0 HOH
 2.688
 O
 O
HIS B:96 B:119 48.0 0.246 71.0 -43.1 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 HIS A:96 A:119 74.0 0.379 -84.1 -23.2 74.0 0.379 0.0
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 HIS A:96 A:119 43.0 0.221 65.2 -44.7 43.0 0.221 0.0 HOH
 2.673
 O
 O
HIS B:96 B:119 47.0 0.241 64.0 -38.8 47.0 0.241 0.0 HOH
 2.780
 O
 O
HIS C:96 C:119 42.0 0.215 70.3 -48.0 42.0 0.215 0.0 HOH
 2.848
 O
 O
HIS D:96 D:119 48.0 0.246 69.1 -39.4 48.0 0.246 0.0 HOH
 2.670
 O
 O
HIS E:96 E:119 40.0 0.205 70.4 -39.4 40.0 0.205 0.0 HOH
 2.744
 O
 O
HIS F:96 F:119 45.0 0.231 71.7 -40.8 45.0 0.231 0.0 HOH
 2.673
 O
 O
HIS G:96 G:119 41.0 0.21 64.6 -45.0 41.0 0.21 0.0 HOH
 2.398
 O
 O
HIS H:96 H:119 45.0 0.231 70.5 -47.9 45.0 0.231 0.0 HOH
 3.895
 CD2
 O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 ARG C:93 A:119 138.0 0.613 76.6 -48.0 127.0 0.564 0.049 A:None:0.049
ARG F:93 D:119 138.0 0.613 84.7 -52.6 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 HIS A:95 A:119 50.0 0.256 73.2 -42.3 50.0 0.256 0.0 HOH
 2.682
 O
 O
HIS B:95 B:119 59.0 0.303 70.8 -42.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ARG A:119 A:119 132.0 0.587 61.2 -30.9