Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230310 . C A CCDS13777.1:NM_023004.5:c.346Gca>Tca_NP_075380.1:p.116A>S Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ALA A:93 A:116 37.0 0.322 T -65.0 -13.7 37.0 0.322 0.0 HOH
 2.598
 N
 O
ALA B:93 B:116 36.0 0.313 T -61.0 -13.3 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ALA A:93 A:116 29.0 0.252 T -64.6 -5.7 29.0 0.252 0.0 HOH
 2.754
 O
 O
ALA B:93 B:116 32.0 0.278 T -61.8 -9.7 NA NA NA
ALA C:93 C:116 43.0 0.374 T -61.5 -18.7 NA NA NA
ALA D:93 D:116 36.0 0.313 T -61.8 -16.4 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 ALA A:93 A:116 35.0 0.304 T -65.9 3.5 35.0 0.304 0.0 HOH
 8.361
 CB
 O
ALA B:93 B:116 46.0 0.4 T -61.5 -4.3 46.0 0.4 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ALA A:90 A:116 70.0 0.609 T -63.1 9.3 70.0 0.609 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ALA A:91 A:116 67.0 0.583 T -56.9 -22.3 67.0 0.583 0.0 HOH
 3.044
 O
 O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ALA A:93 A:116 34.0 0.296 T -62.7 -6.9 34.0 0.296 0.0 HOH
 2.960
 N
 O
ALA B:93 B:116 32.0 0.278 T -56.3 -26.2 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ALA A:93 A:116 55.0 0.478 T -66.1 -17.5 55.0 0.478 0.0 CL
HOH
 6.606
3.265
 O
N
 CL
O
ALA B:93 B:116 64.0 0.557 T -60.7 -21.9 64.0 0.557 0.0
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ALA A:93 A:116 32.0 0.278 T -66.1 -10.3 32.0 0.278 0.0 HOH
 2.067
 H
 O
ALA B:93 B:116 25.0 0.217 T -67.1 -14.0 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ALA A:93 A:116 56.0 0.487 T -59.2 -20.1 56.0 0.487 0.0
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ALA A:93 A:116 52.0 0.452 T -63.7 -19.8 52.0 0.452 0.0 HOH
 2.813
 N
 O
ALA B:93 B:116 56.0 0.487 T -62.9 -18.4 56.0 0.487 0.0 HOH
 2.906
 N
 O
ALA C:93 C:116 55.0 0.478 T -62.5 -15.8 55.0 0.478 0.0 HOH
 3.236
 N
 O
ALA D:93 D:116 53.0 0.461 T -63.3 -15.9 53.0 0.461 0.0 HOH
 2.876
 N
 O
ALA E:93 E:116 55.0 0.478 T -63.2 -13.0 55.0 0.478 0.0 HOH
 2.443
 O
 O
ALA F:93 F:116 52.0 0.452 T -66.1 -13.7 52.0 0.452 0.0 HOH
 2.561
 O
 O
ALA G:93 G:116 52.0 0.452 T -64.1 -10.1 52.0 0.452 0.0 HOH
 3.464
 N
 O
ALA H:93 H:116 55.0 0.478 T -58.9 -16.8 55.0 0.478 0.0 HOH
 2.615
 O
 O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 ALA C:90 A:116 63.0 0.548 T 3.0 -58.7 63.0 0.548 0.0
ALA F:90 D:116 67.0 0.583 T -38.0 -27.4 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 ALA A:92 A:116 51.0 0.443 T -64.2 -18.1 51.0 0.443 0.0 HOH
 2.728
 O
 O
ALA B:92 B:116 47.0 0.409 T -64.5 -18.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ALA A:116 A:116 59.0 0.513 T -60.1 -14.5