Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230453 . C A CCDS13777.1:NM_023004.5:c.203cGc>cTc_NP_075380.1:p.68R>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:45 A:68 137.0 0.609 -123.0 30.9 137.0 0.609 0.0 HOH
 4.777
 N
 O
ARG B:45 B:68 141.0 0.627 -124.5 33.9 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 ARG A:45 A:68 158.0 0.702 -135.1 30.6 158.0 0.702 0.0 HOH
 4.678
 CG
 O
ARG B:45 B:68 145.0 0.644 -124.5 29.7 NA NA NA
ARG C:45 C:68 143.0 0.636 -124.1 40.8 NA NA NA
ARG D:45 D:68 139.0 0.618 -123.2 30.3 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 ARG A:45 A:68 142.0 0.631 -121.5 36.2 142.0 0.631 0.0
ARG B:45 B:68 131.0 0.582 -118.9 48.0 131.0 0.582 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:42 A:68 182.0 0.809 -131.7 25.3 182.0 0.809 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 ARG A:43 A:68 147.0 0.653 -122.9 42.6 147.0 0.653 0.0 ACY
HOH
 7.089
2.893
 O
O
 O
O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:45 A:68 151.0 0.671 -125.4 44.2 151.0 0.671 0.0 CL
HOH
 3.825
4.881
 CG
NH2
 CL
O
ARG B:45 B:68 134.0 0.596 -117.9 35.9 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:45 A:68 149.0 0.662 -120.1 35.0 149.0 0.662 0.0 HOH
 3.621
 NH2
 O
ARG B:45 B:68 139.0 0.618 -120.3 34.3 139.0 0.618 0.0
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:45 A:68 145.0 0.644 -122.5 37.4 145.0 0.644 0.0 HOH
 2.250
 HH11
 O
ARG B:45 B:68 135.0 0.6 -121.9 29.4 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:45 A:68 157.0 0.698 -122.8 32.3 157.0 0.698 0.0
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 ARG A:45 A:68 131.0 0.582 -123.1 30.2 131.0 0.582 0.0 CL
HOH
 2.970
2.799
 NH1
O
 CL
O
ARG B:45 B:68 136.0 0.604 -125.7 29.4 136.0 0.604 0.0 CL
CL
HOH
 9.358
3.267
2.869
 N
NE
O
 CL
CL
O
ARG C:45 C:68 139.0 0.618 -124.6 31.2 139.0 0.618 0.0 CL
HOH
 9.199
3.875
 N
NH2
 CL
O
ARG D:45 D:68 133.0 0.591 -128.2 36.8 133.0 0.591 0.0 CL
HOH
 9.325
2.767
 N
O
 CL
O
ARG E:45 E:68 139.0 0.618 -127.4 32.7 139.0 0.618 0.0 CL
HOH
 9.347
2.695
 N
O
 CL
O
ARG F:45 F:68 133.0 0.591 -126.3 35.0 133.0 0.591 0.0 CL
CL
HOH
 9.394
3.253
2.795
 N
CD
NH2
 CL
CL
O
ARG G:45 G:68 140.0 0.622 -124.7 32.8 140.0 0.622 0.0 CL
HOH
 9.290
2.558
 N
O
 CL
O
ARG H:45 H:68 148.0 0.658 -127.5 34.9 148.0 0.658 0.0 CL
HOH
 9.202
2.889
 N
O
 CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 ARG C:42 A:68 150.0 0.667 -127.8 44.1 150.0 0.667 0.0
ARG F:42 D:68 143.0 0.636 -121.9 45.2 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 ARG A:44 A:68 143.0 0.636 -124.0 38.2 143.0 0.636 0.0 HOH
 2.536
 NH1
 O
ARG B:44 B:68 142.0 0.631 -123.8 35.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 ARG A:68 A:68 167.0 0.742 -117.3 32.2