Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230460 . C A CCDS13777.1:NM_023004.5:c.196Ggc>Tgc_NP_075380.1:p.66G>C Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 GLY A:43 A:66 25.0 0.333 T 78.3 14.4 25.0 0.333 0.0 HOH
 2.561
 O
 O
GLY B:43 B:66 19.0 0.253 T 71.7 22.5 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 GLY A:43 A:66 24.0 0.32 T 79.6 10.7 24.0 0.32 0.0 HOH
 7.690
 CA
 O
GLY B:43 B:66 24.0 0.32 T 87.0 5.3 NA NA NA
GLY C:43 C:66 27.0 0.36 T 82.8 18.5 NA NA NA
GLY D:43 D:66 18.0 0.24 S 80.7 33.7 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 GLY A:43 A:66 24.0 0.32 T 88.4 1.9 24.0 0.32 0.0
GLY B:43 B:66 23.0 0.307 T 89.9 -1.1 23.0 0.307 0.0
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 GLY A:40 A:66 26.0 0.347 T 74.3 10.1 26.0 0.347 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 GLY A:41 A:66 15.0 0.2 T 70.7 26.1 15.0 0.2 0.0 HOH
 2.720
 O
 O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 GLY A:43 A:66 20.0 0.267 T 79.2 14.8 20.0 0.267 0.0 GOL
CL
HOH
 9.423
9.244
3.995
 N
O
CA
 O2
CL
O
GLY B:43 B:66 26.0 0.347 T 85.8 10.9 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 GLY A:43 A:66 25.0 0.333 T 77.0 17.6 25.0 0.333 0.0 HOH
 2.597
 O
 O
GLY B:43 B:66 30.0 0.4 T 90.0 25.9 30.0 0.4 0.0
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 GLY A:43 A:66 28.0 0.373 T 81.6 15.8 28.0 0.373 0.0 HOH
 2.779
 O
 O
GLY B:43 B:66 14.0 0.187 T 78.9 22.3 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 GLY A:43 A:66 20.0 0.267 T 75.8 17.2 20.0 0.267 0.0
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 GLY A:43 A:66 27.0 0.36 T 81.2 20.4 27.0 0.36 0.0 CL
HOH
 9.744
7.295
 O
N
 CL
O
GLY B:43 B:66 28.0 0.373 T 75.4 20.7 28.0 0.373 0.0 CL
CL
HOH
 3.511
9.790
2.888
 CA
O
O
 CL
CL
O
GLY C:43 C:66 29.0 0.387 T 76.9 14.3 29.0 0.387 0.0 CL
CL
HOH
 3.381
9.364
6.751
 CA
N
CA
 CL
CL
O
GLY D:43 D:66 25.0 0.333 T 73.7 14.9 25.0 0.333 0.0 CL
CL
HOH
 8.183
3.577
2.769
 N
CA
O
 CL
CL
O
GLY E:43 E:66 29.0 0.387 T 78.8 11.1 29.0 0.387 0.0 CL
CL
HOH
 8.020
3.615
2.749
 N
CA
O
 CL
CL
O
GLY F:43 F:66 27.0 0.36 T 75.6 18.6 27.0 0.36 0.0 CL
CL
HOH
 3.525
9.761
2.802
 CA
O
O
 CL
CL
O
GLY G:43 G:66 26.0 0.347 T 73.9 15.5 26.0 0.347 0.0 CL
HOH
 3.534
2.532
 CA
O
 CL
O
GLY H:43 H:66 27.0 0.36 T 78.4 17.7 27.0 0.36 0.0 CL
HOH
 3.438
6.748
 CA
N
 CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 GLY C:40 A:66 27.0 0.36 T 93.5 -6.1 27.0 0.36 0.0
GLY F:40 D:66 25.0 0.333 T 95.1 -34.7 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 GLY A:42 A:66 19.0 0.253 T 83.1 6.7 19.0 0.253 0.0 PAB
HOH
 8.393
2.700
 N
O
 O1'
O
GLY B:42 B:66 26.0 0.347 T 83.3 7.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 GLY A:66 A:66 28.0 0.373 T 68.9 20.6