Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230499 . C A CCDS13777.1:NM_023004.5:c.157Gtg>Ttg_NP_075380.1:p.53V>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 THR A:30 A:53 129.0 0.921 T -81.8 152.9 129.0 0.921 0.0 HOH
 3.155
 O
 O
THR B:30 B:53 126.0 0.9 S -87.8 153.3 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 THR A:30 A:53 129.0 0.921 T -78.2 152.9 129.0 0.921 0.0 HOH
 3.570
 CA
 O
THR B:30 B:53 131.0 0.936 T -81.9 146.2 NA NA NA
THR C:30 C:53 129.0 0.921 T -81.8 163.9 NA NA NA
THR D:30 D:53 131.0 0.936 S -75.7 154.6 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 THR A:30 A:53 128.0 0.914 S -83.7 152.2 128.0 0.914 0.0
THR B:30 B:53 129.0 0.921 S -95.0 148.7 129.0 0.921 0.0 HOH
 3.126
 OG1
 O
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 VAL A:27 A:53 150.0 0.968 T -80.7 -39.2 150.0 0.968 0.0
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 VAL A:28 A:53 137.0 0.884 T -86.0 143.5 137.0 0.884 0.0 ACY
HOH
 7.670
2.946
 N
N
 OXT
O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 THR A:30 A:53 130.0 0.929 T -84.0 150.7 130.0 0.929 0.0 HOH
 3.651
 CA
 O
THR B:30 B:53 138.0 0.986 T -74.5 147.8 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 THR A:30 A:53 126.0 0.9 S -82.2 159.2 126.0 0.9 0.0 HOH
 3.996
 CA
 O
THR B:30 B:53 131.0 0.936 S -79.7 151.0 131.0 0.936 0.0
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 THR A:30 A:53 130.0 0.929 S -88.6 158.0 130.0 0.929 0.0 HOH
 2.622
 HA
 O
THR B:30 B:53 129.0 0.921 S -89.8 154.9 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 THR A:30 A:53 134.0 0.957 T -83.5 138.2 134.0 0.957 0.0
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 THR A:30 A:53 132.0 0.943 T -80.5 156.7 132.0 0.943 0.0 HOH
 3.109
 N
 O
THR B:30 B:53 131.0 0.936 T -83.4 149.4 131.0 0.936 0.0 HOH
 2.949
 N
 O
THR C:30 C:53 131.0 0.936 T -80.1 159.4 131.0 0.936 0.0 HOH
 3.491
 C
 O
THR D:30 D:53 131.0 0.936 T -73.2 154.1 131.0 0.936 0.0 HOH
 2.564
 OG1
 O
THR E:30 E:53 131.0 0.936 T -75.1 151.8 131.0 0.936 0.0 HOH
 2.679
 O
 O
THR F:30 F:53 128.0 0.914 S -87.0 157.1 128.0 0.914 0.0 HOH
 3.286
 N
 O
THR G:30 G:53 130.0 0.929 T -72.6 152.5 130.0 0.929 0.0 HOH
 2.644
 OG1
 O
THR H:30 H:53 134.0 0.957 T -76.4 153.5 134.0 0.957 0.0 HOH
 3.381
 CA
 O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 THR C:27 A:53 134.0 0.957 T -76.6 155.1 6.0 0.043 0.914 B:None:0.914
 ZN
 7.728
 CG2
 ZN
THR F:27 D:53 137.0 0.979 T -73.5 143.0 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 THR A:29 A:53 133.0 0.95 T -76.8 150.9 133.0 0.95 0.0 EDO
HOH
 7.330
2.943
 C
N
 O2
O
THR B:29 B:53 133.0 0.95 T -74.3 153.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 VAL A:53 A:53 134.0 0.865 T -73.9 154.3