Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 20230541 . C A CCDS13777.1:NM_023004.5:c.115Gtg>Ttg_NP_075380.1:p.39V>L Homo sapiens reticulon 4 receptor (RTN4R), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5o0p 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 VAL A:16 A:39 29.0 0.187 -60.2 116.6 29.0 0.187 0.0 NAG
HOH
 7.652
3.895
 CG1
CG2
 O7
O
VAL B:16 B:39 30.0 0.194 -56.2 119.6 NA NA NA
5o0q 1 Q99PI8 88.89 0.0 X-RAY
 2017-10-18 VAL A:16 A:39 30.0 0.194 -60.9 119.2 30.0 0.194 0.0 NAG
PO4
HOH
 7.633
7.405
3.654
 CG2
N
CG1
 C8
O1
O
VAL B:16 B:39 28.0 0.181 -61.0 117.6 NA NA NA
VAL C:16 C:39 28.0 0.181 -61.4 114.3 NA NA NA
VAL D:16 D:39 33.0 0.213 -57.1 121.7 NA NA NA
5o0r 1 Q99PI8 88.89 0.0 X-RAY
 2017-11-08 VAL A:16 A:39 33.0 0.213 -61.5 112.6 33.0 0.213 0.0 NAG
HOH
 7.320
4.937
 CG2
CG2
 O5
O
VAL B:16 B:39 30.0 0.194 -61.0 110.0 30.0 0.194 0.0 NAG
HOH
 6.510
6.551
 CG2
CB
 O5
O
1p8t 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 VAL A:13 A:39 26.0 0.168 -75.2 117.2 26.0 0.168 0.0 NAG
 7.958
 CG2
 C8
1ozn 1 Q9BZR6 100.0 0.0 X-RAY
 2003-05-20 VAL A:14 A:39 19.0 0.123 -65.9 122.0 19.0 0.123 0.0 NAG
NDG
HOH
 7.207
9.797
3.694
 CG2
CG2
CG1
 O7
O5
O
5o0k 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 VAL A:16 A:39 29.0 0.187 -61.4 117.5 29.0 0.187 0.0 NAG
GOL
HOH
 7.549
8.864
3.969
 CG1
C
CG1
 O7
O3
O
VAL B:16 B:39 30.0 0.194 -58.2 113.9 NA NA NA
5o0l 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 VAL A:16 A:39 31.0 0.2 -65.5 113.6 31.0 0.2 0.0 NAG
HOH
 8.211
3.867
 CG2
CG1
 C2
O
VAL B:16 B:39 28.0 0.181 -64.2 114.3 28.0 0.181 0.0 NAG
 7.501
 CG2
 C8
5o0m 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 VAL A:16 A:39 29.0 0.187 -63.1 119.0 29.0 0.187 0.0 NAG
HOH
 6.069
3.260
 HG21
HG23
 H2
O
VAL B:16 B:39 32.0 0.206 -61.5 104.1 NA NA NA
5o0n 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 VAL A:16 A:39 30.0 0.194 -58.9 107.2 30.0 0.194 0.0 NAG
NAG
HOH
 7.860
9.522
9.474
 CG2
CG2
N
 C2
C6
O
5o0o 1 Q99PI8 88.5 0.0 X-RAY
 2017-10-18 VAL A:16 A:39 28.0 0.181 -62.7 112.3 28.0 0.181 0.0 NAG
CL
HOH
 7.532
7.419
3.890
 CG2
N
CG1
 O7
CL
O
VAL B:16 B:39 26.0 0.168 -60.3 120.1 26.0 0.168 0.0 NAG
HOH
 7.856
3.838
 CG2
CG1
 C2
O
VAL C:16 C:39 28.0 0.181 -66.8 114.9 28.0 0.181 0.0 NAG
CL
CL
HOH
 7.457
7.675
7.920
3.835
 CG2
N
CA
CG1
 O7
CL
CL
O
VAL D:16 D:39 27.0 0.174 -63.7 118.1 27.0 0.174 0.0 NAG
HOH
 7.422
3.728
 CG2
CG1
 O7
O
VAL E:16 E:39 28.0 0.181 -60.5 114.6 28.0 0.181 0.0 NAG
HOH
 7.579
3.823
 CG2
CG1
 O7
O
VAL F:16 F:39 28.0 0.181 -62.3 119.8 28.0 0.181 0.0 NAG
CL
HOH
 7.463
7.506
3.750
 CG2
O
CG1
 O7
CL
O
VAL G:16 G:39 30.0 0.194 -62.9 116.8 30.0 0.194 0.0 NAG
HOH
 7.709
4.820
 CG2
CG2
 O7
O
VAL H:16 H:39 26.0 0.168 -61.8 114.8 26.0 0.168 0.0 NAG
CL
HOH
 7.468
4.529
4.070
 CG2
CG2
CG1
 O7
CL
O
3kj4 3 Q99M75 90.91 0.0 X-RAY
 2010-09-22 VAL C:13 A:39 35.0 0.226 -68.4 135.5 35.0 0.226 0.0 NDG
NDG
 7.915
5.734
 CG2
CG2
 O7
C8
VAL F:13 D:39 28.0 0.181 -76.7 137.2 NA NA NA
7r86 1 Q99PI8 90.53 0.0 X-RAY
 2021-11-10 VAL A:15 A:39 24.0 0.155 -63.8 120.0 24.0 0.155 0.0 NAG
PAB
HOH
 7.446
8.206
3.642
 CG2
C
CG1
 O7
O1'
O
VAL B:15 B:39 22.0 0.142 -64.7 121.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9bzr6-f1 1 Q9BZR6 100.0 0.0 VAL A:39 A:39 36.0 0.232 -62.3 115.5