Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr22 | 41863533 | . | G | A | CCDS14016.1:NM_032758.3:c.162taC>taT_NP_116147.1:p.54Y>Y | Homo sapiens PHD finger protein 5A (PHF5A), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5ife | 3 | Q7RTV0 | 100.0 | 7e-77 |
X-RAY |
2016-10-26 | TYR | C:64 | D:54 | 107.0 | 0.465 | G | -84.3 | -3.3 | 77.0 | 0.335 | 0.13 |
B:O75533:0.13 |
ZN |
8.558 |
CD2 |
ZN |
|
| 5o9z | 36 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2017-08-16 | TYR | QA:54 | y:54 | NA | NA | NA | NA | NA | NA | NA | NA | ||||||
| 5z56 | 26 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2018-09-19 | TYR | GA:54 | 6:54 | 118.0 | 0.513 | G | -87.7 | -4.1 | 117.0 | 0.509 | 0.004 |
BA:O75533:0.004 |
C C C ZN |
9.158 8.662 8.737 9.109 |
CE1 N OH CD2 |
OP1 N4 O5' ZN |
|
| 5z57 | 26 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2018-09-19 | TYR | GA:54 | 6:54 | 35.0 | 0.152 | G | -87.7 | -4.1 | 35.0 | 0.152 | 0.0 |
C C C ZN |
9.158 8.662 8.737 9.109 |
CE1 N OH CD2 |
OP1 N4 O5' ZN |
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| 5z58 | 26 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2018-09-19 | TYR | GA:54 | 6:54 | 35.0 | 0.152 | G | -87.7 | -4.1 | 35.0 | 0.152 | 0.0 |
C C C ZN |
9.158 8.662 8.737 9.109 |
CE1 N OH CD2 |
OP1 N4 O5' ZN |
||
| 6ah0 | 31 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2018-11-14 | TYR | LA:54 | 6:54 | 31.0 | NA | G | -88.1 | -7.9 | 31.0 | NA | NA |
C C |
9.224 9.995 |
N N |
N3 C5 |
||
| 6ahd | 45 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2018-11-14 | TYR | GB:54 | 6:54 | 32.0 | NA | G | -88.0 | -7.9 | 32.0 | NA | NA |
C C |
9.224 9.996 |
N N |
N3 C5 |
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| 6ff4 | 27 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2018-08-29 | TYR | AA:54 | y:54 | 132.0 | 0.574 | G | -96.8 | 22.0 | 115.0 | 0.5 | 0.074 |
X:O75533:0.074 |
ZN |
8.506 |
CD2 |
ZN |
|
| 6ff7 | 27 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2019-03-13 | TYR | AA:54 | y:54 | 41.0 | NA | G | -92.4 | 13.7 | 41.0 | NA | NA |
ZN |
9.319 |
CB |
ZN |
||
| 6y50 | 2 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2020-07-01 | TYR | B:54 | y:54 | 72.0 | 0.313 | G | -75.8 | 0.1 | 65.0 | 0.283 | 0.03 |
F:O75533:0.03 |
ZN |
7.972 |
CD2 |
ZN |
|
| 6y5q | 1 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2020-06-17 | TYR | A:54 | y:54 | 33.0 | NA | G | -75.8 | 0.1 | 33.0 | NA | NA | ||||||
| 7abg | 22 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2020-12-23 | TYR | V:54 | y:54 | 44.0 | NA | G | -88.5 | 1.6 | 44.0 | NA | NA | ||||||
| 7abh | 2 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2020-12-09 | TYR | B:54 | y:54 | 49.0 | NA | G | -76.4 | -2.6 | 49.0 | NA | NA |
C C |
8.882 9.119 |
N N |
O2 C5 |
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| 7abi | 29 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2021-02-10 | TYR | CA:54 | y:54 | 46.0 | NA | G | -88.6 | 1.5 | 46.0 | NA | NA | ||||||
| 7dvq | 22 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2021-03-31 | TYR | CA:54 | 6:54 | 141.0 | 0.613 | G | -83.0 | -9.6 | 18.0 | 0.078 | 0.535 |
TA:Q8IYB3:0.5 X:O75533:0.048 |
G U C ZN |
6.508 9.148 9.439 9.417 |
CE1 OH OH CD2 |
O2' C5 OP2 ZN |
|
| 7onb | 4 | Q7RTV0 | 100.0 | 8e-77 |
EM |
2021-08-04 | TYR | D:54 | D:54 | 132.0 | 0.574 | G | -81.3 | -4.7 | 97.0 | 0.422 | 0.152 |
C:O75533:0.152 |
ZN |
8.410 |
CD2 |
ZN |
|
| 5syb | 1 | Q7RTV0 | 99.09 | 7e-76 |
X-RAY |
2016-09-07 | TYR | A:57 | A:54 | 133.0 | 0.578 | T | -81.0 | 0.7 | 133.0 | 0.578 | 0.0 |
ZN ZN HOH |
9.964 9.685 2.882 |
CB CE2 O |
ZN ZN O |
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| TYR | B:57 | B:54 | 105.0 | 0.457 | G | -96.8 | -1.8 | NA | NA | NA | |||||||||||||
| 6qx9 | 41 | Q7RTV0 | 100.0 | 3e-72 |
EM |
2019-04-17 | TYR | FB:54 | BP:54 | 135.0 | 0.587 | G | -91.1 | 9.5 | 120.0 | 0.522 | 0.065 |
SB:O75533:0.065 |
ZN |
8.444 |
CD2 |
ZN |
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| 6en4 | 4 | Q7RTV0 | 100.0 | 2e-67 |
X-RAY |
2018-06-20 | TYR | D:64 | D:54 | 83.0 | 0.361 | G | -88.7 | -2.0 | 65.0 | 0.283 | 0.078 |
C:O75533:0.078 |
ZN |
8.871 |
CD2 |
ZN |
|
| 7b0i | 4 | Q7RTV0 | 100.0 | 2e-67 |
X-RAY |
2021-08-04 | TYR | D:64 | D:54 | 78.0 | 0.339 | G | -92.3 | 0.7 | 55.0 | 0.239 | 0.1 |
C:O75533:0.1 |
ZN |
9.191 |
CD2 |
ZN |
|
| 7b91 | 4 | Q7RTV0 | 100.0 | 2e-67 |
X-RAY |
2021-08-04 | TYR | D:64 | D:54 | 83.0 | 0.361 | G | -80.8 | -6.1 | 74.0 | 0.322 | 0.039 |
C:O75533:0.039 |
ZN |
8.735 |
CD2 |
ZN |
|
| 7b92 | 4 | Q7RTV0 | 100.0 | 2e-67 |
X-RAY |
2021-08-04 | TYR | D:64 | D:54 | 63.0 | 0.274 | G | -95.8 | 7.7 | 48.0 | 0.209 | 0.065 |
C:O75533:0.065 |
ZN |
9.347 |
CB |
ZN |
|
| 7b9c | 4 | Q7RTV0 | 100.0 | 2e-67 |
X-RAY |
2021-08-04 | TYR | D:64 | D:54 | 78.0 | 0.339 | G | -82.2 | -7.0 | 60.0 | 0.261 | 0.078 |
C:O75533:0.078 |
ZN HOH |
8.925 6.775 |
CD2 OH |
ZN O |
|
| 7omf | 4 | Q7RTV0 | 100.0 | 2e-67 |
X-RAY |
2021-08-04 | TYR | D:64 | D:54 | 72.0 | 0.313 | G | -77.6 | -2.1 | 54.0 | 0.235 | 0.078 |
C:O75533:0.078 |
ZN |
9.256 |
CB |
ZN |
|
| 7opi | 4 | Q7RTV0 | 100.0 | 2e-67 |
X-RAY |
2021-08-04 | TYR | D:64 | D:54 | 72.0 | 0.313 | G | -77.6 | 0.0 | 60.0 | 0.261 | 0.052 |
C:O75533:0.052 |
ZN |
8.967 |
CD2 |
ZN |
|
| 5zya | 3 | Q7RTV0 | 100.0 | 2e-56 |
EM |
2018-06-20 | TYR | C:48 | D:54 | 107.0 | 0.465 | -111.6 | 87.8 | 89.0 | 0.387 | 0.078 |
B:O75533:0.078 |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q7rtv0-f1 | 1 | Q7RTV0 | 100.0 | 3e-77 | TYR | A:54 | A:54 | 139.0 | 0.604 | G | -86.7 | -6.6 | |