Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr22 | 29737590 | . | A | C | CCDS13855.1:NM_001127.3:c.1696Tac>Gac_NP_001118.3:p.566Y>D | Homo sapiens adaptor related protein complex 1 beta 1 subunit (AP1B1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6yaf | 2 | P63010 | 83.49 | 0.0 |
EM |
2020-07-29 | HIS | B:573 | B:566 | 45.0 | 0.231 | G | -130.0 | -2.1 | 30.0 | 0.154 | 0.077 |
C:P84092:0.077 |
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6yah | 2 | P63010 | 83.49 | 0.0 |
EM |
2020-07-29 | HIS | B:573 | B:566 | 46.0 | 0.236 | G | -129.9 | -2.1 | 30.0 | 0.154 | 0.082 |
C:P84092:0.082 |
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6cm9 | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | TYR | C:568 | B:566 | 61.0 | 0.265 | S | -118.6 | 82.7 | 51.0 | 0.222 | 0.043 |
G:P35585:0.043 |
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6d83 | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | TYR | C:568 | B:566 | 71.0 | 0.309 | S | -118.8 | 86.2 | 63.0 | 0.274 | 0.035 |
G:P35585:0.035 |
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6d84 | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | TYR | C:568 | B:566 | 65.0 | 0.283 | -126.9 | 91.9 | 59.0 | 0.257 | 0.026 |
G:P35585:0.026 |
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TYR | K:568 | F:566 | 66.0 | 0.287 | -127.0 | 91.8 | 59.0 | 0.257 | 0.03 |
O:P35585:0.03 |
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6dff | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | TYR | C:568 | B:566 | 63.0 | 0.274 | S | -118.9 | 83.9 | 56.0 | 0.243 | 0.031 |
G:P35585:0.03 |
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4p6z | 4 | Q10567 | 99.66 | 0.0 |
X-RAY |
2014-05-21 | TYR | D:582 | B:566 | 79.0 | 0.343 | T | -107.2 | 19.6 | 73.0 | 0.317 | 0.026 |
C:P35585:0.026 |
HOH |
3.636 |
CE1 |
O |
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4hmy | 2 | Q10567 | 99.49 | 0.0 |
X-RAY |
2013-03-06 | TYR | B:568 | B:566 | 68.0 | 0.296 | G | -174.6 | 84.3 | 64.0 | 0.278 | 0.018 |
C:P35585:0.017 |
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4uqi | 2 | P63010 | 89.6 | 0.0 |
X-RAY |
2014-07-30 | HIS | B:566 | B:566 | 57.0 | 0.292 | T | -108.3 | 18.2 | 49.0 | 0.251 | 0.041 |
C:P84092:0.041 |
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6cri | 2 | Q10567 | 99.65 | 0.0 |
EM |
2018-08-01 | TYR | B:553 | B:566 | 66.0 | 0.287 | -117.8 | 86.7 | 59.0 | 0.257 | 0.03 |
F:P35585:0.03 |
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TYR | J:553 | I:566 | 65.0 | 0.283 | -117.8 | 86.6 | 59.0 | 0.257 | 0.026 |
N:P35585:0.026 |
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TYR | R:553 | J:566 | 66.0 | 0.287 | -117.8 | 86.6 | 59.0 | 0.257 | 0.03 |
V:P35585:0.03 |
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2xa7 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2010-07-21 | HIS | B:566 | B:566 | 54.0 | 0.277 | T | -121.2 | 60.6 | 47.0 | 0.241 | 0.036 |
C:P84092:0.036 |
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6qh5 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2019-09-04 | HIS | B:566 | B:566 | 53.0 | 0.272 | T | -148.4 | 11.3 | 48.0 | 0.246 | 0.026 |
C:P84092:0.026 |
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6qh6 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2019-09-04 | HIS | B:566 | B:566 | 56.0 | 0.287 | T | -105.1 | 26.3 | 47.0 | 0.241 | 0.046 |
D:P84092:0.046 |
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6qh7 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2019-09-04 | HIS | B:566 | B:566 | 56.0 | 0.287 | T | -96.8 | 27.5 | 50.0 | 0.256 | 0.031 |
D:Q3ZC13:0.031 |
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2jkr | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2008-10-28 | HIS | B:566 | B:566 | 65.0 | 0.333 | T | -105.9 | 16.8 | 58.0 | 0.297 | 0.036 |
F:P84092:0.036 |
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HIS | C:566 | E:566 | 63.0 | 0.323 | T | -103.8 | 16.9 | NA | NA | NA | |||||||||||||
2jkt | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2008-10-28 | HIS | B:566 | B:566 | 67.0 | 0.344 | T | -96.5 | 27.3 | 60.0 | 0.308 | 0.036 |
F:P84092:0.036 |
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HIS | C:566 | E:566 | 67.0 | 0.344 | T | -97.8 | 28.4 | NA | NA | NA | |||||||||||||
2vgl | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2007-12-25 | HIS | B:566 | B:566 | 59.0 | 0.303 | T | -108.6 | 15.9 | 48.0 | 0.246 | 0.057 |
C:P84092:0.056 |
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6owo | 2 | Q9DBG3 | 93.06 | 0.0 |
EM |
2019-09-11 | HIS | B:566 | B:566 | 65.0 | 0.333 | T | -132.0 | 48.4 | 59.0 | 0.303 | 0.03 |
C:P84091:0.031 |
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6owt | 2 | P62944 | 93.06 | 0.0 |
EM |
2019-09-25 | HIS | B:566 | B:566 | 67.0 | 0.344 | T | -110.6 | 41.8 | 62.0 | 0.318 | 0.026 |
C:Q5FWI9:0.026 |
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6oxl | 2 | Q9DBG3 | 93.06 | 0.0 |
EM |
2019-09-11 | HIS | B:566 | B:566 | 50.0 | 0.256 | G | -119.3 | 46.0 | 42.0 | 0.215 | 0.041 |
C:P84091:0.041 |
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6yae | 2 | P63010 | 93.06 | 0.0 |
EM |
2020-07-29 | HIS | B:566 | B:566 | 64.0 | 0.328 | T | -116.0 | 46.7 | 54.0 | 0.277 | 0.051 |
C:P84092:0.051 |
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1w63 | 2 | P52303 | 97.77 | 0.0 |
X-RAY |
2004-09-21 | TYR | B:566 | B:566 | 85.0 | 0.37 | T | -87.2 | 33.8 | 82.0 | 0.357 | 0.013 |
M:P35585:0.013 |
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TYR | D:566 | D:566 | 84.0 | 0.365 | T | -87.2 | 33.8 | NA | NA | NA | |||||||||||||
TYR | F:566 | F:566 | 85.0 | 0.37 | T | -87.2 | 33.8 | NA | NA | NA | |||||||||||||
TYR | H:566 | H:566 | 84.0 | 0.365 | T | -87.3 | 33.8 | NA | NA | NA | |||||||||||||
TYR | J:566 | J:566 | 84.0 | 0.365 | T | -87.3 | 33.8 | NA | NA | NA | |||||||||||||
TYR | L:566 | L:566 | 85.0 | 0.37 | T | -87.2 | 33.8 | NA | NA | NA | |||||||||||||
6uri | 4 | P63010 | 92.55 | 0.0 |
X-RAY |
2020-07-29 | HIS | D:590 | B:566 | 59.0 | 0.303 | T | -129.4 | 25.5 | 49.0 | 0.251 | 0.052 |
E:Q96CW1:0.051 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q10567-f1 | 1 | Q10567 | 99.89 | 0.0 | TYR | A:566 | A:566 | 30.0 | 0.13 | T | -113.8 | 17.1 | |
af-p63010-f1 | 1 | P63010 | 83.49 | 0.0 | HIS | A:566 | A:566 | 30.0 | 0.154 | T | -118.6 | 18.6 |