Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr22 | 29755836 | . | T | A | CCDS13855.1:NM_001127.3:c.256Atg>Ttg_NP_001118.3:p.86M>L | Homo sapiens adaptor related protein complex 1 beta 1 subunit (AP1B1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6yaf | 2 | P63010 | 83.49 | 0.0 |
EM |
2020-07-29 | MET | B:93 | B:86 | 52.0 | 0.281 | H | -58.5 | -41.7 | 52.0 | 0.281 | 0.0 | ||||||
6yah | 2 | P63010 | 83.49 | 0.0 |
EM |
2020-07-29 | MET | B:93 | B:86 | 51.0 | 0.276 | H | -58.5 | -41.6 | 51.0 | 0.276 | 0.0 | ||||||
6cm9 | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | MET | C:88 | B:86 | 154.0 | 0.832 | S | -97.2 | 38.9 | 25.0 | 0.135 | 0.697 |
D:P84077:0.697 |
GTP |
9.515 |
CE |
O3G |
|
6d83 | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | MET | C:88 | B:86 | 148.0 | 0.8 | G | -82.9 | 23.1 | 22.0 | 0.119 | 0.681 |
D:P84077:0.681 |
GTP |
9.139 |
CE |
O1G |
|
6d84 | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | MET | C:88 | B:86 | 147.0 | 0.795 | G | -83.1 | 28.8 | 17.0 | 0.092 | 0.703 |
D:P84077:0.703 |
GTP |
9.328 |
CE |
O1G |
|
MET | K:88 | F:86 | 146.0 | 0.789 | G | -83.0 | 28.8 | 17.0 | 0.092 | 0.697 |
L:P84077:0.697 |
GTP |
9.221 |
CE |
O3G |
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6dff | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | MET | C:88 | B:86 | 154.0 | 0.832 | G | -88.9 | 30.0 | 23.0 | 0.124 | 0.708 |
D:P84077:0.708 |
GTP |
9.596 |
CE |
O3G |
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4p6z | 4 | Q10567 | 99.66 | 0.0 |
X-RAY |
2014-05-21 | MET | D:102 | B:86 | 125.0 | 0.676 | G | -64.8 | -14.4 | 125.0 | 0.676 | 0.0 | ||||||
4hmy | 2 | Q10567 | 99.49 | 0.0 |
X-RAY |
2013-03-06 | MET | B:88 | B:86 | 74.0 | 0.4 | T | -56.3 | -48.8 | 4.0 | 0.022 | 0.378 |
E:P84077:0.378 |
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4uqi | 2 | P63010 | 89.6 | 0.0 |
X-RAY |
2014-07-30 | MET | B:86 | B:86 | 112.0 | 0.605 | T | -49.9 | -25.7 | 112.0 | 0.605 | 0.0 | ||||||
6cri | 2 | Q10567 | 99.65 | 0.0 |
EM |
2018-08-01 | MET | B:73 | B:86 | 137.0 | 0.741 | T | -90.7 | 34.1 | 15.0 | 0.081 | 0.66 |
C:P84077:0.659 |
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MET | J:73 | I:86 | 137.0 | 0.741 | T | -90.7 | 34.1 | 17.0 | 0.092 | 0.649 |
K:P84077:0.649 |
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MET | R:73 | J:86 | 138.0 | 0.746 | T | -90.7 | 34.0 | 17.0 | 0.092 | 0.654 |
S:P84077:0.654 |
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2xa7 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2010-07-21 | MET | B:86 | B:86 | 67.0 | 0.362 | G | -44.7 | -45.2 | 67.0 | 0.362 | 0.0 | ||||||
6qh5 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2019-09-04 | MET | B:86 | B:86 | 111.0 | 0.6 | T | -106.2 | 1.0 | 111.0 | 0.6 | 0.0 | ||||||
6qh6 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2019-09-04 | MET | B:86 | B:86 | 153.0 | 0.827 | G | -52.3 | -31.2 | 153.0 | 0.827 | 0.0 | ||||||
6qh7 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2019-09-04 | MET | B:86 | B:86 | 150.0 | 0.811 | G | -59.8 | -28.0 | 150.0 | 0.811 | 0.0 | ||||||
2jkr | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2008-10-28 | MET | B:86 | B:86 | 112.0 | 0.605 | G | -78.1 | -3.5 | 112.0 | 0.605 | 0.0 | ||||||
MET | C:86 | E:86 | 108.0 | 0.584 | G | -76.5 | -5.2 | NA | NA | NA | |||||||||||||
2jkt | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2008-10-28 | MET | B:86 | B:86 | 112.0 | 0.605 | G | -77.3 | -15.8 | 112.0 | 0.605 | 0.0 | ||||||
MET | C:86 | E:86 | 109.0 | 0.589 | G | -75.7 | -17.3 | NA | NA | NA | |||||||||||||
2vgl | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2007-12-25 | MET | B:86 | B:86 | 108.0 | 0.584 | T | -54.7 | -10.5 | 108.0 | 0.584 | 0.0 | ||||||
6owo | 2 | Q9DBG3 | 93.06 | 0.0 |
EM |
2019-09-11 | MET | B:86 | B:86 | 133.0 | 0.719 | G | -75.9 | -10.6 | 133.0 | 0.719 | 0.0 | ||||||
6owt | 2 | P62944 | 93.06 | 0.0 |
EM |
2019-09-25 | MET | B:86 | B:86 | 104.0 | 0.562 | S | -75.5 | -40.4 | 104.0 | 0.562 | 0.0 | ||||||
6oxl | 2 | Q9DBG3 | 93.06 | 0.0 |
EM |
2019-09-11 | MET | B:86 | B:86 | 129.0 | 0.697 | G | -68.7 | -19.5 | 129.0 | 0.697 | 0.0 | ||||||
6yae | 2 | P63010 | 93.06 | 0.0 |
EM |
2020-07-29 | MET | B:86 | B:86 | 113.0 | 0.611 | T | -68.1 | 8.2 | 113.0 | 0.611 | 0.0 | ||||||
1w63 | 2 | P52303 | 97.77 | 0.0 |
X-RAY |
2004-09-21 | MET | B:86 | B:86 | 140.0 | 0.757 | T | -38.7 | -9.6 | 140.0 | 0.757 | 0.0 | ||||||
MET | D:86 | D:86 | 142.0 | 0.768 | T | -38.7 | -9.6 | NA | NA | NA | |||||||||||||
MET | F:86 | F:86 | 141.0 | 0.762 | T | -38.7 | -9.6 | NA | NA | NA | |||||||||||||
MET | H:86 | H:86 | 143.0 | 0.773 | T | -38.6 | -9.7 | NA | NA | NA | |||||||||||||
MET | J:86 | J:86 | 146.0 | 0.789 | T | -38.7 | -9.6 | NA | NA | NA | |||||||||||||
MET | L:86 | L:86 | 144.0 | 0.778 | T | -38.7 | -9.5 | NA | NA | NA | |||||||||||||
6uri | 4 | P63010 | 92.55 | 0.0 |
X-RAY |
2020-07-29 | MET | D:110 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q10567-f1 | 1 | Q10567 | 99.89 | 0.0 | MET | A:86 | A:86 | 132.0 | 0.714 | H | -64.0 | -27.8 | |
af-p63010-f1 | 1 | P63010 | 83.49 | 0.0 | MET | A:86 | A:86 | 133.0 | 0.719 | H | -64.8 | -28.9 |