Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr22 | 29755859 | . | T | A | CCDS13855.1:NM_001127.3:c.233aAg>aTg_NP_001118.3:p.78K>M | Homo sapiens adaptor related protein complex 1 beta 1 subunit (AP1B1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6yaf | 2 | P63010 | 83.49 | 0.0 |
EM |
2020-07-29 | LYS | B:85 | B:78 | 105.0 | 0.525 | T | -48.7 | -39.6 | 95.0 | 0.475 | 0.05 |
C:P84092:0.05 |
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6yah | 2 | P63010 | 83.49 | 0.0 |
EM |
2020-07-29 | LYS | B:85 | B:78 | 105.0 | 0.525 | T | -48.7 | -39.6 | 95.0 | 0.475 | 0.05 |
C:P84092:0.05 |
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6cm9 | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | LYS | C:80 | B:78 | 158.0 | 0.79 | S | -67.9 | -34.5 | 133.0 | 0.665 | 0.125 |
G:P35585:0.125 |
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6d83 | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | LYS | C:80 | B:78 | 148.0 | 0.74 | T | -69.5 | -29.9 | 128.0 | 0.64 | 0.1 |
G:P35585:0.1 |
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6d84 | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | LYS | C:80 | B:78 | 155.0 | 0.775 | T | -69.2 | -27.5 | 130.0 | 0.65 | 0.125 |
G:P35585:0.125 |
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LYS | K:80 | F:78 | 152.0 | 0.76 | T | -69.2 | -27.6 | 127.0 | 0.635 | 0.125 |
O:P35585:0.125 |
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6dff | 2 | Q10567 | 99.66 | 0.0 |
EM |
2018-08-08 | LYS | C:80 | B:78 | 150.0 | 0.75 | S | -65.4 | -45.0 | 100.0 | 0.5 | 0.25 |
G:P35585:0.25 |
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4p6z | 4 | Q10567 | 99.66 | 0.0 |
X-RAY |
2014-05-21 | LYS | D:94 | B:78 | 146.0 | 0.73 | T | -64.2 | -32.6 | 143.0 | 0.715 | 0.015 |
C:P35585:0.015 |
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4hmy | 2 | Q10567 | 99.49 | 0.0 |
X-RAY |
2013-03-06 | LYS | B:80 | B:78 | 160.0 | 0.8 | T | -42.8 | -59.7 | 112.0 | 0.56 | 0.24 |
C:P35585:0.24 |
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4uqi | 2 | P63010 | 89.6 | 0.0 |
X-RAY |
2014-07-30 | LYS | B:78 | B:78 | 140.0 | 0.7 | H | -85.4 | -48.0 | 50.0 | 0.25 | 0.45 |
C:P84092:0.45 |
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6cri | 2 | Q10567 | 99.65 | 0.0 |
EM |
2018-08-01 | LYS | B:65 | B:78 | 154.0 | 0.77 | T | -67.1 | -39.6 | 122.0 | 0.61 | 0.16 |
F:P35585:0.16 |
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LYS | J:65 | I:78 | 149.0 | 0.745 | T | -67.1 | -39.7 | 117.0 | 0.585 | 0.16 |
N:P35585:0.16 |
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LYS | R:65 | J:78 | 152.0 | 0.76 | T | -67.1 | -39.7 | 122.0 | 0.61 | 0.15 |
V:P35585:0.15 |
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2xa7 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2010-07-21 | LYS | B:78 | B:78 | 134.0 | 0.67 | T | -51.9 | -50.9 | 105.0 | 0.525 | 0.145 |
C:P84092:0.145 |
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6qh5 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2019-09-04 | LYS | B:78 | B:78 | 134.0 | 0.67 | H | -79.6 | -37.7 | 47.0 | 0.235 | 0.435 |
C:P84092:0.435 |
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6qh6 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2019-09-04 | LYS | B:78 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6qh7 | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2019-09-04 | LYS | B:78 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
2jkr | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2008-10-28 | LYS | B:78 | B:78 | 137.0 | 0.685 | T | -92.3 | 17.0 | 56.0 | 0.28 | 0.405 |
F:P84092:0.405 |
HOH |
3.162 |
NZ |
O |
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LYS | C:78 | E:78 | 138.0 | 0.69 | T | -91.1 | 16.5 | NA | NA | NA | |||||||||||||
2jkt | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2008-10-28 | LYS | B:78 | B:78 | 131.0 | 0.655 | T | -97.1 | 17.9 | 60.0 | 0.3 | 0.355 |
F:P84092:0.355 |
HOH |
3.409 |
NZ |
O |
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LYS | C:78 | E:78 | 133.0 | 0.665 | T | -96.9 | 18.1 | NA | NA | NA | |||||||||||||
2vgl | 2 | P63010 | 93.06 | 0.0 |
X-RAY |
2007-12-25 | LYS | B:78 | B:78 | 140.0 | 0.7 | H | -73.0 | -35.1 | 44.0 | 0.22 | 0.48 |
C:P84092:0.48 |
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6owo | 2 | Q9DBG3 | 93.06 | 0.0 |
EM |
2019-09-11 | LYS | B:78 | B:78 | 138.0 | 0.69 | H | -114.3 | -41.5 | 23.0 | 0.115 | 0.575 |
C:P84091:0.575 |
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6owt | 2 | P62944 | 93.06 | 0.0 |
EM |
2019-09-25 | LYS | B:78 | B:78 | 105.0 | NA | T | -84.1 | 15.4 | 105.0 | NA | NA | ||||||
6oxl | 2 | Q9DBG3 | 93.06 | 0.0 |
EM |
2019-09-11 | LYS | B:78 | B:78 | 119.0 | 0.595 | H | -119.9 | -35.9 | 51.0 | 0.255 | 0.34 |
C:P84091:0.34 |
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6yae | 2 | P63010 | 93.06 | 0.0 |
EM |
2020-07-29 | LYS | B:78 | B:78 | 139.0 | 0.695 | T | -72.3 | -16.6 | 54.0 | 0.27 | 0.425 |
C:P84092:0.425 |
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1w63 | 2 | P52303 | 97.77 | 0.0 |
X-RAY |
2004-09-21 | LYS | B:78 | B:78 | 112.0 | 0.56 | H | -64.0 | -30.2 | 42.0 | 0.21 | 0.35 |
M:P35585:0.35 |
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LYS | D:78 | D:78 | 111.0 | 0.555 | H | -64.0 | -30.2 | NA | NA | NA | |||||||||||||
LYS | F:78 | F:78 | 112.0 | 0.56 | H | -64.0 | -30.3 | NA | NA | NA | |||||||||||||
LYS | H:78 | H:78 | 108.0 | 0.54 | H | -64.0 | -30.3 | NA | NA | NA | |||||||||||||
LYS | J:78 | J:78 | 111.0 | 0.555 | H | -64.1 | -30.2 | NA | NA | NA | |||||||||||||
LYS | L:78 | L:78 | 111.0 | 0.555 | H | -64.0 | -30.2 | NA | NA | NA | |||||||||||||
6uri | 4 | P63010 | 92.55 | 0.0 |
X-RAY |
2020-07-29 | LYS | D:102 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q10567-f1 | 1 | Q10567 | 99.89 | 0.0 | LYS | A:78 | A:78 | 173.0 | 0.865 | T | -67.3 | -31.0 | |
af-p63010-f1 | 1 | P63010 | 83.49 | 0.0 | LYS | A:78 | A:78 | 141.0 | 0.705 | T | -66.5 | -36.3 |