Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 30032805 . G A CCDS13861.1:NM_000268.3:c.180tgG>tgA_NP_000259.1:p.60W>* Homo sapiens neurofibromin 2 (NF2), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6cds 1 P35240 99.71 0.0 X-RAY
2018-07-18 TRP A:60 A:60 126.0 0.494 G -49.2 -27.3 126.0 0.494 0.0 PIO
HOH
3.445
4.509
CD2
CH2
C1
O
TRP B:60 B:60 128.0 0.502 G -46.1 -31.1 NA NA NA
7lwh 1 P35240 99.41 0.0 X-RAY
2021-08-11 TRP A:60 A:60 58.0 0.227 G -60.5 -22.3 58.0 0.227 0.0 HOH
2.648
O
O
1isn 1 P46662 99.38 0.0 X-RAY
2002-04-03 TRP A:43 A:60 90.0 0.353 G -51.5 -8.0 90.0 0.353 0.0
4zrj 1 P35240 100.0 0.0 X-RAY
2015-06-17 TRP A:60 A:60 60.0 0.235 G -57.7 -26.0 60.0 0.235 0.0 GOL
HOH
2.589
3.930
O
CZ2
O3
O
4zri 1 P35240 100.0 0.0 X-RAY
2015-06-17 TRP A:64 A:60 131.0 0.514 G -78.2 -8.9 131.0 0.514 0.0
TRP B:64 B:60 136.0 0.533 G -50.2 -35.2 NA NA NA
4zrk 1 P46662 99.38 0.0 X-RAY
2015-06-17 TRP A:64 A:60 141.0 0.553 G -64.0 -17.8 141.0 0.553 0.0 HOH
4.419
CE2
O
TRP B:64 B:60 115.0 0.451 G -68.0 -16.0 NA NA NA
TRP C:64 C:60 124.0 0.486 G -66.9 -14.0 NA NA NA
TRP D:64 D:60 136.0 0.533 G -66.7 -17.2 NA NA NA
1h4r 1 P35240 100.0 0.0 X-RAY
2002-01-16 TRP A:61 A:60 117.0 0.459 G -64.9 -17.3 117.0 0.459 0.0 HOH
2.806
O
O
TRP B:61 B:60 103.0 0.404 G -64.3 -21.7 103.0 0.404 0.0 HOH
2.558
O
O
4p7i 1 P46662 99.36 0.0 X-RAY
2014-04-09 TRP A:64 A:60 137.0 0.537 G -60.4 -22.9 137.0 0.537 0.0 HOH
3.694
NE1
O
TRP B:64 B:60 132.0 0.518 G -65.8 -21.0 NA NA NA
3u8z 1 P35240 100.0 0.0 X-RAY
2011-11-02 TRP A:48 A:60 111.0 0.435 G -59.4 -24.0 60.0 0.235 0.2 C:P35240:0.2
HOH
2.702
O
O
TRP B:48 B:60 110.0 0.431 G -59.8 -22.8 NA NA NA
TRP C:48 C:60 113.0 0.443 G -60.4 -23.2 57.0 0.224 0.219 A:P35240:0.22
HOH
2.718
O
O
TRP D:48 D:60 111.0 0.435 G -59.0 -23.7 NA NA NA
3wa0 1 P46662 99.32 0.0 X-RAY
2014-05-28 TRP A:47 A:60 109.0 0.427 T -69.1 -24.6 109.0 0.427 0.0 HOH
7.276
CD1
O
TRP B:47 B:60 99.0 0.388 T -78.2 -17.4 NA NA NA
TRP C:47 C:60 133.0 0.522 T -66.8 -28.1 NA NA NA
TRP D:47 D:60 120.0 0.471 T -70.8 -17.2 NA NA NA
TRP E:47 E:60 113.0 0.443 T -68.2 -25.1 NA NA NA
TRP F:47 F:60 120.0 0.471 T -73.7 -17.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p35240-f1 1 P35240 100.0 0.0 TRP A:60 A:60 64.0 0.251 G -66.4 -16.3