Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133467377 . T A CCDS3080.1:NM_001063.3:c.165agT>agA_NP_001054.1:p.55S>R Homo sapiens transferrin (TF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3v83 1 P02787 100.0 0.0 X-RAY
 2012-02-15 SER A:55 A:36 15.0 0.13 E -109.3 158.8 15.0 0.13 0.0 SO4
HOH
 8.460
3.405
 OG
OG
 O1
O
SER B:55 B:36 15.0 0.13 E -127.2 161.6 NA NA NA
SER C:55 C:36 15.0 0.13 E -121.6 166.4 NA NA NA
SER D:55 D:36 19.0 0.165 E -126.6 161.3 NA NA NA
SER E:55 E:36 12.0 0.104 E -122.1 156.3 NA NA NA
SER F:55 F:36 20.0 0.174 E -114.8 156.6 NA NA NA
3v8x 2 P02787 100.0 0.0 X-RAY
 2012-02-29 SER B:55 B:36 38.0 0.33 -113.2 144.5 38.0 0.33 0.0
6d03 2 P02787 100.0 0.0 EM
 2018-06-20 SER C:55 C:36 34.0 0.296 E -139.5 166.2 34.0 0.296 0.0
SER D:55 D:36 47.0 0.409 E -146.7 151.6 47.0 0.409 0.0
6d04 2 P02787 100.0 0.0 EM
 2018-06-20 SER C:55 C:36 14.0 0.122 E -143.7 167.4 14.0 0.122 0.0
SER D:55 D:36 14.0 0.122 E -143.6 167.5 14.0 0.122 0.0
6d05 2 P02787 100.0 0.0 EM
 2018-06-20 SER C:55 C:36 19.0 0.165 -123.3 178.0 19.0 0.165 0.0
SER D:55 D:36 19.0 0.165 -123.3 178.0 19.0 0.165 0.0
5dyh 1 P02787 99.86 0.0 X-RAY
 2016-04-27 SER A:55 A:36 20.0 0.174 E -106.6 162.8 20.0 0.174 0.0
SER B:55 B:36 17.0 0.148 E -106.4 164.5 NA NA NA
6uj6 1 Q06AH7 99.71 0.0 X-RAY
 2020-09-30 SER A:55 A:55 41.0 0.357 E -126.0 167.9 41.0 0.357 0.0 HOH
 3.330
 CA
 O
3qyt 1 P02787 100.0 0.0 X-RAY
 2012-03-14 SER A:36 A:36 22.0 0.191 -106.3 -177.3 22.0 0.191 0.0 HOH
 3.560
 CA
 O
4x1b 1 P02787 100.0 0.0 X-RAY
 2015-04-08 SER A:36 A:36 30.0 0.261 E -127.8 168.2 30.0 0.261 0.0 HOH
 3.313
 CA
 O
4x1d 1 P02787 100.0 0.0 X-RAY
 2015-04-08 SER A:36 A:36 30.0 0.261 E -127.8 179.8 30.0 0.261 0.0 HOH
 3.295
 CB
 O
SER B:36 B:36 31.0 0.27 E -127.3 -180.0 NA NA NA
5h52 1 P02787 100.0 0.0 X-RAY
 2017-11-08 SER A:36 A:36 27.0 0.235 E -126.5 170.9 27.0 0.235 0.0
5wtd 1 P02787 100.0 0.0 X-RAY
 2017-12-20 SER A:36 A:36 31.0 0.27 E -117.7 162.6 31.0 0.27 0.0 HOH
 3.307
 CA
 O
6jas 1 P02787 100.0 0.0 X-RAY
 2020-01-29 SER A:36 A:36 21.0 0.183 E -114.7 165.9 21.0 0.183 0.0 HOH
 3.484
 CA
 O
4h0w 1 P02787 99.85 0.0 X-RAY
 2012-12-26 SER A:36 A:36 23.0 0.2 E -130.4 166.8 23.0 0.2 0.0 HOH
 3.445
 CA
 O
5x5p 1 P02787 99.85 0.0 X-RAY
 2018-02-21 SER A:36 A:36 48.0 0.417 E -117.7 161.4 48.0 0.417 0.0 HOH
 8.430
 C
 O
5y6k 1 P02787 99.85 0.0 X-RAY
 2018-01-24 SER A:36 A:36 33.0 0.287 E -123.5 177.3 33.0 0.287 0.0
6ctc 1 P02787 99.85 0.0 X-RAY
 2018-10-24 SER A:36 A:36 43.0 0.374 E -134.0 174.6 43.0 0.374 0.0 HOH
 3.655
 CA
 O
3ve1 2 P02787 99.71 0.0 X-RAY
 2012-02-22 SER B:36 B:36 26.0 0.226 E -124.9 163.2 26.0 0.226 0.0 HOH
 3.275
 CA
 O
SER D:36 D:36 26.0 0.226 E -128.6 161.2 NA NA NA
6soy 3 P02787 100.0 0.0 X-RAY
 2019-11-06 SER C:34 C:36 17.0 0.148 E -135.5 152.1 17.0 0.148 0.0
6soz 3 P02787 100.0 0.0 X-RAY
 2019-11-06 SER C:34 C:36 24.0 0.209 E -136.6 156.2 24.0 0.209 0.0
2hav 1 P02787 100.0 0.0 X-RAY
 2006-06-27 SER A:33 A:36 46.0 0.4 E -133.2 159.0 46.0 0.4 0.0
SER B:33 B:36 44.0 0.383 E -124.4 -171.7 NA NA NA
3s9l 2 P02787 99.41 0.0 X-RAY
 2011-08-10 SER C:50 C:36 47.0 0.409 E -161.8 156.3 47.0 0.409 0.0
SER D:50 D:36 49.0 0.426 E -144.0 146.4 NA NA NA
3s9m 2 P02787 99.41 0.0 X-RAY
 2011-08-10 SER C:50 C:36 13.0 0.113 E -154.6 164.8 13.0 0.113 0.0
SER D:50 D:36 47.0 0.409 E -137.1 140.1 NA NA NA
3s9n 2 P02787 99.41 0.0 X-RAY
 2011-08-10 SER C:50 C:36 53.0 0.461 E -121.7 166.8 53.0 0.461 0.0
SER D:50 NA:NA DO NA DO DO DO NA NA NA
2hau 1 P02787 99.7 0.0 X-RAY
 2006-06-27 SER A:33 A:36 16.0 0.139 E -96.7 176.8 16.0 0.139 0.0
SER B:33 B:36 33.0 0.287 E -91.8 161.0 NA NA NA
1bp5 1 P02787 100.0 0.0 X-RAY
 1999-01-13 SER A:36 A:36 9.0 0.078 E -142.7 155.7 9.0 0.078 0.0 HOH
 3.236
 CB
 O
SER B:36 B:36 11.0 0.096 E -137.1 160.4 NA NA NA
SER C:36 C:36 14.0 0.122 E -118.4 164.4 NA NA NA
SER D:36 D:36 22.0 0.191 E -118.2 159.0 NA NA NA
1btj 1 P02787 100.0 0.0 X-RAY
 1999-01-13 SER A:36 A:36 46.0 0.4 E -133.7 164.6 46.0 0.4 0.0
SER B:36 B:36 46.0 0.4 E -128.9 174.4 NA NA NA
2o84 1 P02787 99.7 0.0 X-RAY
 2007-01-23 SER A:36 X:36 54.0 0.47 E -105.2 159.2 54.0 0.47 0.0 HOH
 5.769
 OG
 O
2o7u 1 P02787 99.41 0.0 X-RAY
 2007-01-23 SER A:36 B:36 37.0 0.322 E -103.1 163.4 37.0 0.322 0.0
SER B:36 A:36 39.0 0.339 E -105.6 163.4 NA NA NA
SER C:36 C:36 37.0 0.322 E -107.5 161.4 NA NA NA
SER D:36 D:36 28.0 0.243 E -116.8 165.8 NA NA NA
SER E:36 E:36 29.0 0.252 E -115.6 168.7 NA NA NA
SER F:36 F:36 26.0 0.226 E -112.4 168.1 NA NA NA
SER G:36 G:36 27.0 0.235 E -115.5 166.1 NA NA NA
SER H:36 H:36 29.0 0.252 E -115.9 167.1 NA NA NA
SER I:36 I:36 28.0 0.243 E -115.5 167.0 NA NA NA
3fgs 1 P02787 99.41 0.0 X-RAY
 2009-05-19 SER A:36 A:36 30.0 0.261 E -130.5 164.2 30.0 0.261 0.0 HOH
 3.315
 CA
 O
1oqg 1 P02787 99.7 0.0 X-RAY
 2003-03-18 SER A:36 A:36 40.0 0.348 E -130.4 160.8 40.0 0.348 0.0 HOH
 3.305
 CA
 O
1oqh 1 P02787 99.7 0.0 X-RAY
 2003-03-18 SER A:36 A:36 35.0 0.304 E -121.7 168.3 35.0 0.304 0.0 HOH
 6.451
 OG
 O
1jqf 1 P02787 99.7 0.0 X-RAY
 2001-10-17 SER A:36 A:36 41.0 0.357 E -129.7 162.8 41.0 0.357 0.0 HOH
 3.318
 CA
 O
1dtg 1 P02787 99.4 0.0 X-RAY
 2000-01-21 SER A:36 A:36 20.0 0.174 E -134.2 166.8 20.0 0.174 0.0 HOH
 3.698
 CA
 O
1n84 1 P02787 100.0 0.0 X-RAY
 2003-03-18 SER A:36 A:36 39.0 0.339 E -132.6 162.8 39.0 0.339 0.0 HOH
 3.683
 CB
 O
1fqe 1 P02787 99.7 0.0 X-RAY
 2001-05-16 SER A:36 A:36 41.0 0.357 E -118.4 161.8 41.0 0.357 0.0 HOH
 3.368
 OG
 O
1fqf 1 P02787 99.7 0.0 X-RAY
 2001-05-16 SER A:36 A:36 11.0 0.096 E -124.0 152.8 11.0 0.096 0.0 HOH
 3.871
 CA
 O
1n7x 1 P02787 99.7 0.0 X-RAY
 2003-03-18 SER A:36 A:36 42.0 0.365 E -124.1 160.0 42.0 0.365 0.0 HOH
 3.702
 CA
 O
1b3e 1 P02787 99.7 0.0 X-RAY
 1999-03-26 SER A:33 A:36 40.0 0.348 E -125.5 165.1 40.0 0.348 0.0 HOH
 3.614
 CB
 O
1a8e 1 P02787 100.0 0.0 X-RAY
 1998-06-17 SER A:34 A:36 39.0 0.339 E -130.9 166.1 39.0 0.339 0.0 HOH
 3.424
 CB
 O
1a8f 1 P02787 100.0 0.0 X-RAY
 1998-06-17 SER A:34 A:36 24.0 0.209 E -123.1 157.9 24.0 0.209 0.0 HOH
 3.447
 CA
 O
1suv 2 P02787 100.0 0.0 EM
 2004-04-13 SER C:34 C:36 41.0 0.357 E -130.9 166.2 41.0 0.357 0.0
SER D:34 D:36 40.0 0.348 E -130.9 166.1 40.0 0.348 0.0
1d3k 1 P02787 99.7 0.0 X-RAY
 2000-03-01 SER A:34 A:36 42.0 0.365 E -121.4 164.4 42.0 0.365 0.0 HOH
 3.443
 CA
 O
1d4n 1 P02787 99.7 0.0 X-RAY
 2000-03-01 SER A:34 A:36 43.0 0.374 E -117.2 158.8 43.0 0.374 0.0 HOH
 3.302
 CA
 O
1n7w 1 P02787 99.7 0.0 X-RAY
 2003-03-18 SER A:36 A:36 36.0 0.313 E -125.5 164.3 36.0 0.313 0.0 HOH
 3.545
 CB
 O
1ryo 1 P02787 100.0 0.0 X-RAY
 2004-05-11 SER A:36 A:36 33.0 0.287 E -128.0 163.4 33.0 0.287 0.0 HOH
 3.429
 CA
 O
1tfd 1 P19134 82.57 0.0 X-RAY
 1993-04-15 ARG A:36 A:36 37.0 0.164 65.7 86.3 37.0 0.164 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p02787-f1 1 P02787 99.86 0.0 SER A:55 A:55 34.0 0.296 E -125.2 163.9