Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133483065 . G A CCDS3080.1:NM_001063.3:c.1243Gtc>Atc_NP_001054.1:p.415V>I Homo sapiens transferrin (TF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3v83 1 P02787 100.0 0.0 X-RAY
 2012-02-15 VAL A:415 A:396 1.0 0.006 H -58.7 -41.6 1.0 0.006 0.0 BCT
FE
HOH
 9.953
9.001
3.082
 N
CG2
O
 O1
FE
O
VAL B:415 B:396 1.0 0.006 H -59.4 -40.6 NA NA NA
VAL C:415 C:396 1.0 0.006 H -68.3 -29.1 NA NA NA
VAL D:415 D:396 1.0 0.006 H -63.0 -39.2 NA NA NA
VAL E:415 E:396 2.0 0.013 H -55.3 -46.3 NA NA NA
VAL F:415 F:396 1.0 0.006 H -65.0 -32.7 NA NA NA
3v8x 2 P02787 100.0 0.0 X-RAY
 2012-02-29 VAL B:415 B:396 2.0 0.013 H -82.5 -34.4 2.0 0.013 0.0 HOH
 7.127
 N
 O
6d03 2 P02787 100.0 0.0 EM
 2018-06-20 VAL C:415 C:396 1.0 0.006 H -74.6 -27.0 1.0 0.006 0.0 FE
 9.072
 CG2
 FE
VAL D:415 D:396 2.0 0.013 H -66.3 -34.8 2.0 0.013 0.0 FE
CO3
 9.987
8.650
 CG2
N
 FE
O2
6d04 2 P02787 100.0 0.0 EM
 2018-06-20 VAL C:415 C:396 2.0 0.013 H -68.8 -26.1 2.0 0.013 0.0 FE
CO3
 9.432
9.823
 CG2
N
 FE
O1
VAL D:415 D:396 2.0 0.013 H -68.7 -26.1 2.0 0.013 0.0 FE
CO3
 9.424
9.823
 CG2
N
 FE
O1
6d05 2 P02787 100.0 0.0 EM
 2018-06-20 VAL C:415 C:396 0.0 0.0 H -70.6 -27.5 0.0 0.0 0.0 FE
CO3
 9.558
9.142
 CG2
N
 FE
O3
VAL D:415 D:396 0.0 0.0 H -70.6 -27.6 0.0 0.0 0.0 FE
CO3
 9.567
9.096
 CG2
N
 FE
O3
5dyh 1 P02787 99.86 0.0 X-RAY
 2016-04-27 VAL A:415 A:396 2.0 0.013 H -68.7 -36.0 2.0 0.013 0.0
VAL B:415 B:396 1.0 0.006 H -68.5 -36.4 NA NA NA
6uj6 1 Q06AH7 99.71 0.0 X-RAY
 2020-09-30 VAL A:415 A:415 1.0 0.006 H -63.2 -43.7 1.0 0.006 0.0 CR
MLI
BCT
 9.215
9.603
8.579
 CG2
CG2
CG2
 CR
O7
O3
3qyt 1 P02787 100.0 0.0 X-RAY
 2012-03-14 VAL A:396 A:396 0.0 0.0 H -59.4 -38.4 0.0 0.0 0.0 FE
CO3
HOH
 9.172
9.986
7.004
 CG2
N
CG2
 FE
O2
O
4x1b 1 P02787 100.0 0.0 X-RAY
 2015-04-08 VAL A:396 A:396 2.0 0.013 H -58.3 -47.4 2.0 0.013 0.0 FE
MLI
HOH
 8.870
9.352
6.051
 CG2
CG2
O
 FE
O9
O
4x1d 1 P02787 100.0 0.0 X-RAY
 2015-04-08 VAL A:396 A:396 1.0 0.006 H -48.3 -57.8 1.0 0.006 0.0 YB
MLI
HOH
 9.543
9.581
8.974
 CG2
N
CG2
 YB
O8
O
VAL B:396 B:396 1.0 0.006 H -48.6 -57.8 NA NA NA
5h52 1 P02787 100.0 0.0 X-RAY
 2017-11-08 VAL A:396 A:396 2.0 0.013 H -57.7 -47.5 2.0 0.013 0.0 MLI
4TI
HOH
 9.455
8.711
6.728
 N
CG2
CG2
 O9
TI
O
5wtd 1 P02787 100.0 0.0 X-RAY
 2017-12-20 VAL A:396 A:396 1.0 0.006 H -59.3 -36.2 1.0 0.006 0.0 FE
MLI
HOH
 9.066
9.414
6.706
 CG2
N
CG2
 FE
O8
O
6jas 1 P02787 100.0 0.0 X-RAY
 2020-01-29 VAL A:396 A:396 1.0 0.006 H -59.9 -36.7 1.0 0.006 0.0 FE
MLI
HOH
 8.891
9.414
6.690
 CG2
CG2
N
 FE
O9
O
4h0w 1 P02787 99.85 0.0 X-RAY
 2012-12-26 VAL A:396 A:396 1.0 0.006 H -64.3 -40.2 1.0 0.006 0.0 FE
CO3
HOH
 9.087
9.891
6.576
 CG2
N
N
 FE
O2
O
5x5p 1 P02787 99.85 0.0 X-RAY
 2018-02-21 VAL A:396 A:396 1.0 0.006 H -56.0 -40.4 1.0 0.006 0.0 MLI
FE
 9.503
9.049
 N
CG2
 O9
FE
5y6k 1 P02787 99.85 0.0 X-RAY
 2018-01-24 VAL A:396 A:396 2.0 0.013 H -72.9 -34.6 2.0 0.013 0.0 MLI
FE
 9.552
9.150
 CG1
CG1
 O9
FE
6ctc 1 P02787 99.85 0.0 X-RAY
 2018-10-24 VAL A:396 A:396 2.0 0.013 H -58.4 -44.8 2.0 0.013 0.0 FE
CO3
HOH
 9.080
9.838
6.021
 CG2
N
O
 FE
O2
O
3ve1 2 P02787 99.71 0.0 X-RAY
 2012-02-22 VAL B:396 B:396 2.0 0.013 H -60.5 -27.1 2.0 0.013 0.0 FE
HOH
 9.013
6.408
 CG1
O
 FE
O
VAL D:396 D:396 2.0 0.013 H -56.0 -29.1 NA NA NA
6soy 3 P02787 100.0 0.0 X-RAY
 2019-11-06 VAL C:394 C:396 1.0 0.006 H -70.7 -45.0 1.0 0.006 0.0 FE
 9.587
 N
 FE
6soz 3 P02787 100.0 0.0 X-RAY
 2019-11-06 VAL C:394 C:396 2.0 0.013 H -70.7 -37.8 2.0 0.013 0.0 FE
 9.458
 CG2
 FE
2hav 1 P02787 100.0 0.0 X-RAY
 2006-06-27 VAL A:393 A:396 1.0 0.006 H -67.5 -29.5 1.0 0.006 0.0
VAL B:393 B:396 1.0 0.006 H -61.4 -40.4 NA NA NA
3s9l 2 P02787 99.41 0.0 X-RAY
 2011-08-10 VAL C:410 C:396 1.0 0.006 H -62.8 -35.3 1.0 0.006 0.0
VAL D:410 D:396 1.0 0.006 H -69.3 -31.7 NA NA NA
3s9m 2 P02787 99.41 0.0 X-RAY
 2011-08-10 VAL C:410 C:396 2.0 0.013 H -62.7 -38.5 2.0 0.013 0.0
VAL D:410 D:396 0.0 0.0 H -69.8 -28.2 NA NA NA
3s9n 2 P02787 99.41 0.0 X-RAY
 2011-08-10 VAL C:410 C:396 0.0 0.0 H -71.0 -31.2 0.0 0.0 0.0
VAL D:410 D:396 0.0 0.0 H -70.3 -31.7 NA NA NA
2hau 1 P02787 99.7 0.0 X-RAY
 2006-06-27 VAL A:393 A:396 0.0 0.0 H -67.2 -39.9 0.0 0.0 0.0 CIT
 8.502
 CG2
 O3
VAL B:393 B:396 2.0 0.013 H -62.4 -40.2 NA NA NA
3v89 2 P02787 100.0 0.0 X-RAY
 2012-02-15 VAL B:60 B:396 1.0 0.006 H -56.5 -39.5 1.0 0.006 0.0
3skp 1 P02787 100.0 0.0 X-RAY
 2012-02-15 VAL A:59 A:396 1.0 0.006 H -59.9 -37.7 1.0 0.006 0.0 HOH
 2.957
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p02787-f1 1 P02787 99.86 0.0 VAL A:415 A:415 1.0 0.006 H -60.7 -38.2