Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr3 | 133485220 | . | G | A | CCDS3080.1:NM_001063.3:c.1429Gct>Act_NP_001054.1:p.477A>T | Homo sapiens transferrin (TF), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3v83 | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2012-02-15 | ALA | A:477 | A:458 | 1.0 | 0.009 | I | -72.5 | -32.9 | 1.0 | 0.009 | 0.0 |
BCT FE HOH |
2.514 4.691 2.870 |
N N O |
O2 FE O |
||
| ALA | B:477 | B:458 | 1.0 | 0.009 | I | -69.5 | -35.5 | NA | NA | NA | |||||||||||||
| ALA | C:477 | C:458 | 3.0 | 0.026 | I | -54.6 | -36.9 | NA | NA | NA | |||||||||||||
| ALA | D:477 | D:458 | 1.0 | 0.009 | I | -77.8 | -37.4 | NA | NA | NA | |||||||||||||
| ALA | E:477 | E:458 | 1.0 | 0.009 | I | -76.7 | -33.4 | NA | NA | NA | |||||||||||||
| ALA | F:477 | F:458 | 1.0 | 0.009 | I | -75.6 | -35.9 | NA | NA | NA | |||||||||||||
| 3v8x | 2 | P02787 | 100.0 | 0.0 |
X-RAY |
2012-02-29 | ALA | B:477 | B:458 | 2.0 | 0.017 | I | -73.4 | -31.6 | 2.0 | 0.017 | 0.0 |
HOH |
3.590 |
N |
O |
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| 6d03 | 2 | P02787 | 100.0 | 0.0 |
EM |
2018-06-20 | ALA | C:477 | C:458 | 2.0 | 0.017 | I | -78.9 | -16.8 | 2.0 | 0.017 | 0.0 |
FE CO3 |
5.387 2.561 |
N N |
FE O3 |
||
| ALA | D:477 | D:458 | 1.0 | 0.009 | I | -74.7 | -19.2 | 1.0 | 0.009 | 0.0 |
FE CO3 |
5.431 2.998 |
CB N |
FE O3 |
|||||||||
| 6d04 | 2 | P02787 | 100.0 | 0.0 |
EM |
2018-06-20 | ALA | C:477 | C:458 | 1.0 | 0.009 | I | -76.4 | -20.7 | 1.0 | 0.009 | 0.0 |
FE CO3 |
5.214 2.705 |
N N |
FE O2 |
||
| ALA | D:477 | D:458 | 1.0 | 0.009 | I | -76.4 | -20.7 | 1.0 | 0.009 | 0.0 |
FE CO3 |
5.212 2.701 |
N N |
FE O2 |
|||||||||
| 6d05 | 2 | P02787 | 100.0 | 0.0 |
EM |
2018-06-20 | ALA | C:477 | C:458 | 1.0 | 0.009 | I | -78.3 | -14.8 | 1.0 | 0.009 | 0.0 |
FE CO3 |
5.263 3.464 |
N N |
FE O2 |
||
| ALA | D:477 | D:458 | 2.0 | 0.017 | I | -78.4 | -14.8 | 2.0 | 0.017 | 0.0 |
FE CO3 |
5.285 3.444 |
N N |
FE O2 |
|||||||||
| 5dyh | 1 | P02787 | 99.86 | 0.0 |
X-RAY |
2016-04-27 | ALA | A:477 | A:458 | 0.0 | 0.0 | I | -87.0 | -31.9 | 0.0 | 0.0 | 0.0 |
CIT CIT 4TI CO3 |
5.005 8.504 4.002 1.964 |
H HB3 H H |
O7 O1 TI O2 |
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| ALA | B:477 | B:458 | 1.0 | 0.009 | I | -87.0 | -30.7 | NA | NA | NA | |||||||||||||
| 6uj6 | 1 | Q06AH7 | 99.71 | 0.0 |
X-RAY |
2020-09-30 | ALA | A:477 | A:477 | 1.0 | 0.009 | I | -67.1 | -46.6 | 1.0 | 0.009 | 0.0 |
CR MLI |
4.783 3.067 |
N N |
CR O9 |
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| 3qyt | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2012-03-14 | ALA | A:458 | A:458 | 0.0 | 0.0 | I | -79.0 | -23.5 | 0.0 | 0.0 | 0.0 |
FE CO3 HOH |
4.823 2.990 5.733 |
N N N |
FE O3 O |
||
| 4x1b | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2015-04-08 | ALA | A:458 | A:458 | 2.0 | 0.017 | I | -73.8 | -44.1 | 2.0 | 0.017 | 0.0 |
FE MLI HOH |
4.884 2.748 2.966 |
N N O |
FE O6 O |
||
| 4x1d | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2015-04-08 | ALA | A:458 | A:458 | 2.0 | 0.017 | I | -72.5 | -44.1 | 2.0 | 0.017 | 0.0 |
YB MLI |
4.874 3.069 |
N N |
YB O7 |
||
| ALA | B:458 | B:458 | 2.0 | 0.017 | I | -72.7 | -43.1 | NA | NA | NA | |||||||||||||
| 5h52 | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2017-11-08 | ALA | A:458 | A:458 | 2.0 | 0.017 | I | -72.3 | -48.8 | 2.0 | 0.017 | 0.0 |
MLI 4TI HOH |
2.617 4.835 5.495 |
N N N |
O6 TI O |
||
| 5wtd | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2017-12-20 | ALA | A:458 | A:458 | 1.0 | 0.009 | I | -74.9 | -38.1 | 1.0 | 0.009 | 0.0 |
FE MLI HOH |
4.668 2.770 2.704 |
N N O |
FE O6 O |
||
| 6jas | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2020-01-29 | ALA | A:458 | A:458 | 2.0 | 0.017 | I | -73.4 | -33.8 | 2.0 | 0.017 | 0.0 |
FE MLI HOH |
4.709 2.893 9.217 |
N N CB |
FE O6 O |
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| 4h0w | 1 | P02787 | 99.85 | 0.0 |
X-RAY |
2012-12-26 | ALA | A:458 | A:458 | 0.0 | 0.0 | I | -79.9 | -32.6 | 0.0 | 0.0 | 0.0 |
FE CO3 HOH |
4.691 2.748 2.818 |
N N O |
FE O3 O |
||
| 5x5p | 1 | P02787 | 99.85 | 0.0 |
X-RAY |
2018-02-21 | ALA | A:458 | A:458 | 1.0 | 0.009 | I | -76.8 | -34.7 | 1.0 | 0.009 | 0.0 |
MLI FE HOH |
2.761 4.640 7.801 |
N N CB |
O6 FE O |
||
| 5y6k | 1 | P02787 | 99.85 | 0.0 |
X-RAY |
2018-01-24 | ALA | A:458 | A:458 | 1.0 | 0.009 | I | -69.9 | -38.0 | 1.0 | 0.009 | 0.0 |
MLI FE |
2.704 5.091 |
N N |
O6 FE |
||
| 6ctc | 1 | P02787 | 99.85 | 0.0 |
X-RAY |
2018-10-24 | ALA | A:458 | A:458 | 1.0 | 0.009 | I | -73.4 | -31.9 | 1.0 | 0.009 | 0.0 |
FE CO3 HOH |
4.841 3.055 5.739 |
N N N |
FE O1 O |
||
| 3ve1 | 2 | P02787 | 99.71 | 0.0 |
X-RAY |
2012-02-22 | ALA | B:458 | B:458 | 1.0 | 0.009 | I | -73.2 | -39.1 | 1.0 | 0.009 | 0.0 |
CO3 FE HOH |
2.715 4.723 9.718 |
N N N |
O3 FE O |
||
| ALA | D:458 | D:458 | 1.0 | 0.009 | I | -75.2 | -37.7 | NA | NA | NA | |||||||||||||
| 6soy | 3 | P02787 | 100.0 | 0.0 |
X-RAY |
2019-11-06 | ALA | C:456 | C:458 | 0.0 | 0.0 | I | -73.9 | -31.4 | 0.0 | 0.0 | 0.0 |
FE |
4.448 |
N |
FE |
||
| 6soz | 3 | P02787 | 100.0 | 0.0 |
X-RAY |
2019-11-06 | ALA | C:456 | C:458 | 1.0 | 0.009 | I | -70.4 | -32.0 | 1.0 | 0.009 | 0.0 |
FE |
4.427 |
N |
FE |
||
| 2hav | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2006-06-27 | ALA | A:455 | A:458 | 0.0 | 0.0 | I | -61.0 | -35.4 | 0.0 | 0.0 | 0.0 |
CIT CIT |
3.261 8.877 |
N CB |
O2 O6 |
||
| ALA | B:455 | B:458 | 1.0 | 0.009 | I | -74.8 | -44.0 | NA | NA | NA | |||||||||||||
| 3s9l | 2 | P02787 | 99.41 | 0.0 |
X-RAY |
2011-08-10 | ALA | C:472 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ALA | D:472 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 3s9m | 2 | P02787 | 99.41 | 0.0 |
X-RAY |
2011-08-10 | ALA | C:472 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ALA | D:472 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 3s9n | 2 | P02787 | 99.41 | 0.0 |
X-RAY |
2011-08-10 | ALA | C:472 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ALA | D:472 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 2hau | 1 | P02787 | 99.7 | 0.0 |
X-RAY |
2006-06-27 | ALA | A:455 | A:458 | 0.0 | 0.0 | I | -71.6 | -36.7 | 0.0 | 0.0 | 0.0 |
CIT |
4.182 |
N |
O2 |
||
| ALA | B:455 | B:458 | 0.0 | 0.0 | I | -68.4 | -59.6 | NA | NA | NA | |||||||||||||
| 3v89 | 2 | P02787 | 100.0 | 0.0 |
X-RAY |
2012-02-15 | ALA | B:122 | B:458 | 4.0 | 0.035 | I | -80.6 | -35.6 | 4.0 | 0.035 | 0.0 | ||||||
| 3skp | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2012-02-15 | ALA | A:121 | A:458 | 1.0 | 0.009 | I | -71.8 | -36.6 | 1.0 | 0.009 | 0.0 |
SO4 SO4 HOH |
4.745 9.892 2.849 |
N CB O |
O3 O2 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p02787-f1 | 1 | P02787 | 99.86 | 0.0 | ALA | A:477 | A:477 | 0.0 | 0.0 | I | -78.8 | -28.5 | |