Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133485235 . C A CCDS3080.1:NM_001063.3:c.1444Ccc>Acc_NP_001054.1:p.482P>T Homo sapiens transferrin (TF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3v83 1 P02787 100.0 0.0 X-RAY
 2012-02-15 PRO A:482 A:463 1.0 0.007 H -69.1 -48.0 1.0 0.007 0.0 BCT
FE
HOH
 7.331
9.978
3.335
 CD
CD
CG
 O3
FE
O
PRO B:482 B:463 3.0 0.021 H -65.3 -42.8 NA NA NA
PRO C:482 C:463 8.0 0.055 H -64.9 -53.5 NA NA NA
PRO D:482 D:463 4.0 0.028 H -65.5 -43.7 NA NA NA
PRO E:482 E:463 0.0 0.0 H -60.8 -46.3 NA NA NA
PRO F:482 F:463 0.0 0.0 H -63.9 -51.7 NA NA NA
3v8x 2 P02787 100.0 0.0 X-RAY
 2012-02-29 PRO B:482 B:463 0.0 0.0 H -66.0 -47.8 0.0 0.0 0.0 HOH
 7.738
 CD
 O
6d03 2 P02787 100.0 0.0 EM
 2018-06-20 PRO C:482 C:463 1.0 0.007 H -74.3 -43.8 1.0 0.007 0.0 CO3
 7.327
 CD
 O3
PRO D:482 D:463 2.0 0.014 H -73.6 -48.2 2.0 0.014 0.0 CO3
 8.443
 CD
 O3
6d04 2 P02787 100.0 0.0 EM
 2018-06-20 PRO C:482 C:463 1.0 0.007 H -72.5 -45.9 1.0 0.007 0.0 CO3
 7.480
 CD
 O2
PRO D:482 D:463 1.0 0.007 H -72.5 -46.0 1.0 0.007 0.0 CO3
 7.478
 CD
 O2
6d05 2 P02787 100.0 0.0 EM
 2018-06-20 PRO C:482 C:463 1.0 0.007 H -67.7 -55.3 1.0 0.007 0.0 CO3
 7.911
 CD
 O2
PRO D:482 D:463 3.0 0.021 H -67.7 -55.2 3.0 0.021 0.0 CO3
 7.912
 CD
 O2
5dyh 1 P02787 99.86 0.0 X-RAY
 2016-04-27 PRO A:482 A:463 0.0 0.0 H -63.0 -52.1 0.0 0.0 0.0 4TI
CO3
 9.322
6.461
 HD2
HD2
 TI
O3
PRO B:482 B:463 0.0 0.0 H -62.8 -52.8 NA NA NA
6uj6 1 Q06AH7 99.71 0.0 X-RAY
 2020-09-30 PRO A:482 A:482 0.0 0.0 H -49.0 -53.2 0.0 0.0 0.0 CR
MLI
 9.938
7.258
 CD
CD
 CR
O8
3qyt 1 P02787 100.0 0.0 X-RAY
 2012-03-14 PRO A:463 A:463 1.0 0.007 H -57.1 -48.0 1.0 0.007 0.0 FE
CO3
 9.736
7.207
 CD
CD
 FE
O1
4x1b 1 P02787 100.0 0.0 X-RAY
 2015-04-08 PRO A:463 A:463 0.0 0.0 H -58.6 -52.2 0.0 0.0 0.0 MLI
HOH
 7.191
3.743
 CD
CD
 O6
O
4x1d 1 P02787 100.0 0.0 X-RAY
 2015-04-08 PRO A:463 A:463 0.0 0.0 H -58.9 -50.1 0.0 0.0 0.0 MLI
 7.543
 CD
 O6
PRO B:463 B:463 0.0 0.0 H -57.2 -50.7 NA NA NA
5h52 1 P02787 100.0 0.0 X-RAY
 2017-11-08 PRO A:463 A:463 0.0 0.0 H -58.0 -51.9 0.0 0.0 0.0 MLI
 7.025
 CD
 O6
5wtd 1 P02787 100.0 0.0 X-RAY
 2017-12-20 PRO A:463 A:463 0.0 0.0 H -63.9 -43.9 0.0 0.0 0.0 MLI
HOH
 7.113
3.677
 CD
CD
 O6
O
6jas 1 P02787 100.0 0.0 X-RAY
 2020-01-29 PRO A:463 A:463 0.0 0.0 H -65.5 -46.9 0.0 0.0 0.0 MLI
 7.109
 CD
 O6
4h0w 1 P02787 99.85 0.0 X-RAY
 2012-12-26 PRO A:463 A:463 0.0 0.0 H -68.1 -38.4 0.0 0.0 0.0 FE
CO3
HOH
 9.997
7.399
3.808
 CD
CD
CG
 FE
O1
O
5x5p 1 P02787 99.85 0.0 X-RAY
 2018-02-21 PRO A:463 A:463 0.0 0.0 H -60.8 -43.9 0.0 0.0 0.0 MLI
FE
 7.060
9.998
 CD
CD
 O6
FE
5y6k 1 P02787 99.85 0.0 X-RAY
 2018-01-24 PRO A:463 A:463 0.0 0.0 H -51.2 -54.8 0.0 0.0 0.0 MLI
 6.911
 CD
 O6
6ctc 1 P02787 99.85 0.0 X-RAY
 2018-10-24 PRO A:463 A:463 0.0 0.0 H -66.6 -41.2 0.0 0.0 0.0 FE
CO3
HOH
 9.962
7.198
8.862
 CD
CD
CB
 FE
O1
O
3ve1 2 P02787 99.71 0.0 X-RAY
 2012-02-22 PRO B:463 B:463 0.0 0.0 H -64.3 -39.5 0.0 0.0 0.0 CO3
FE
HOH
 7.429
9.897
8.937
 CD
CD
O
 O2
FE
O
PRO D:463 D:463 0.0 0.0 H -65.5 -35.9 NA NA NA
6soy 3 P02787 100.0 0.0 X-RAY
 2019-11-06 PRO C:461 C:463 1.0 0.007 H -70.5 -32.6 1.0 0.007 0.0 FE
 9.794
 CD
 FE
6soz 3 P02787 100.0 0.0 X-RAY
 2019-11-06 PRO C:461 C:463 1.0 0.007 H -68.0 -34.0 1.0 0.007 0.0 FE
 9.908
 CD
 FE
2hav 1 P02787 100.0 0.0 X-RAY
 2006-06-27 PRO A:460 A:463 0.0 0.0 H -61.0 -57.3 0.0 0.0 0.0 CIT
 8.375
 CD
 O2
PRO B:460 B:463 0.0 0.0 H -54.5 -66.6 NA NA NA
3s9l 2 P02787 99.41 0.0 X-RAY
 2011-08-10 PRO C:477 NA:NA DO NA DO DO DO NA NA NA
PRO D:477 NA:NA DO NA DO DO DO NA NA NA
3s9m 2 P02787 99.41 0.0 X-RAY
 2011-08-10 PRO C:477 NA:NA DO NA DO DO DO NA NA NA
PRO D:477 NA:NA DO NA DO DO DO NA NA NA
3s9n 2 P02787 99.41 0.0 X-RAY
 2011-08-10 PRO C:477 NA:NA DO NA DO DO DO NA NA NA
PRO D:477 NA:NA DO NA DO DO DO NA NA NA
2hau 1 P02787 99.7 0.0 X-RAY
 2006-06-27 PRO A:460 A:463 0.0 0.0 H -58.4 -53.1 0.0 0.0 0.0 CIT
 8.973
 CD
 O2
PRO B:460 B:463 0.0 0.0 H -62.3 -57.3 NA NA NA
3v89 2 P02787 100.0 0.0 X-RAY
 2012-02-15 PRO B:127 B:463 0.0 0.0 H -60.2 -48.5 0.0 0.0 0.0
3skp 1 P02787 100.0 0.0 X-RAY
 2012-02-15 PRO A:126 A:463 0.0 0.0 H -64.6 -40.4 0.0 0.0 0.0 SO4
HOH
 9.586
3.974
 CD
CD
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p02787-f1 1 P02787 99.86 0.0 PRO A:482 A:482 1.0 0.007 H -64.6 -42.4