Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133486930 . A C CCDS3080.1:NM_001063.3:c.1544aAg>aCg_NP_001054.1:p.515K>T Homo sapiens transferrin (TF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3v83 1 P02787 100.0 0.0 X-RAY
 2012-02-15 LYS A:515 A:496 136.0 0.68 T -60.3 -25.6 136.0 0.68 0.0 HOH
 3.910
 O
 O
LYS B:515 B:496 127.0 0.635 T -66.5 -30.0 NA NA NA
LYS C:515 C:496 124.0 0.62 S -86.3 -29.4 NA NA NA
LYS D:515 D:496 127.0 0.635 T -62.5 -28.0 NA NA NA
LYS E:515 E:496 129.0 0.645 S -66.0 -31.0 NA NA NA
LYS F:515 F:496 126.0 0.63 T -69.3 -31.8 NA NA NA
3v8x 2 P02787 100.0 0.0 X-RAY
 2012-02-29 LYS B:515 B:496 64.0 NA T -73.6 -0.0 64.0 NA NA
6d03 2 P02787 100.0 0.0 EM
 2018-06-20 LYS C:515 C:496 126.0 0.63 H -92.6 5.2 126.0 0.63 0.0
LYS D:515 D:496 129.0 0.645 T -88.3 29.9 129.0 0.645 0.0
6d04 2 P02787 100.0 0.0 EM
 2018-06-20 LYS C:515 C:496 145.0 0.725 T -81.1 -14.2 145.0 0.725 0.0
LYS D:515 D:496 144.0 0.72 T -81.1 -14.2 144.0 0.72 0.0
6d05 2 P02787 100.0 0.0 EM
 2018-06-20 LYS C:515 C:496 142.0 0.71 T -78.9 -36.9 142.0 0.71 0.0
LYS D:515 D:496 142.0 0.71 T -78.9 -36.9 142.0 0.71 0.0
5dyh 1 P02787 99.86 0.0 X-RAY
 2016-04-27 LYS A:515 A:496 55.0 NA S -71.3 -32.7 55.0 NA NA
LYS B:515 B:496 128.0 0.64 S -71.2 -31.6 NA NA NA
6uj6 1 Q06AH7 99.71 0.0 X-RAY
 2020-09-30 LYS A:515 A:515 138.0 0.69 T -65.1 -29.0 138.0 0.69 0.0
3qyt 1 P02787 100.0 0.0 X-RAY
 2012-03-14 LYS A:496 A:496 135.0 0.675 T -67.3 -26.6 135.0 0.675 0.0
4x1b 1 P02787 100.0 0.0 X-RAY
 2015-04-08 LYS A:496 A:496 127.0 0.635 T -66.9 -31.9 127.0 0.635 0.0 HOH
 2.827
 O
 O
4x1d 1 P02787 100.0 0.0 X-RAY
 2015-04-08 LYS A:496 A:496 123.0 0.615 T -66.0 -37.1 123.0 0.615 0.0 HOH
 6.557
 O
 O
LYS B:496 B:496 125.0 0.625 T -66.5 -36.7 NA NA NA
5h52 1 P02787 100.0 0.0 X-RAY
 2017-11-08 LYS A:496 A:496 131.0 0.655 T -63.3 -32.7 131.0 0.655 0.0
5wtd 1 P02787 100.0 0.0 X-RAY
 2017-12-20 LYS A:496 A:496 128.0 0.64 T -68.0 -35.0 128.0 0.64 0.0 HOH
 8.151
 O
 O
6jas 1 P02787 100.0 0.0 X-RAY
 2020-01-29 LYS A:496 A:496 130.0 0.65 T -69.1 -30.0 130.0 0.65 0.0 HOH
 6.911
 O
 O
4h0w 1 P02787 99.85 0.0 X-RAY
 2012-12-26 LYS A:496 A:496 130.0 0.65 T -67.8 -25.9 130.0 0.65 0.0 HOH
 2.890
 O
 O
5x5p 1 P02787 99.85 0.0 X-RAY
 2018-02-21 LYS A:496 A:496 134.0 0.67 S -71.9 -33.1 134.0 0.67 0.0
5y6k 1 P02787 99.85 0.0 X-RAY
 2018-01-24 LYS A:496 A:496 132.0 0.66 S -79.0 -23.7 132.0 0.66 0.0
6ctc 1 P02787 99.85 0.0 X-RAY
 2018-10-24 LYS A:496 A:496 54.0 NA T -70.0 -40.3 54.0 NA NA HOH
 2.624
 O
 O
3ve1 2 P02787 99.71 0.0 X-RAY
 2012-02-22 LYS B:496 B:496 131.0 0.655 T -69.4 -32.3 131.0 0.655 0.0
LYS D:496 D:496 132.0 0.66 T -72.4 -29.3 NA NA NA
6soy 3 P02787 100.0 0.0 X-RAY
 2019-11-06 LYS C:494 C:496 138.0 0.69 T -66.9 -27.6 138.0 0.69 0.0
6soz 3 P02787 100.0 0.0 X-RAY
 2019-11-06 LYS C:494 C:496 142.0 0.71 T -66.1 -31.4 142.0 0.71 0.0
2hav 1 P02787 100.0 0.0 X-RAY
 2006-06-27 LYS A:493 A:496 133.0 0.665 T -71.4 6.1 133.0 0.665 0.0
LYS B:493 B:496 116.0 0.58 T -71.8 -32.9 NA NA NA
3s9l 2 P02787 99.41 0.0 X-RAY
 2011-08-10 LYS C:510 NA:NA DO NA DO DO DO NA NA NA
LYS D:510 NA:NA DO NA DO DO DO NA NA NA
3s9m 2 P02787 99.41 0.0 X-RAY
 2011-08-10 LYS C:510 NA:NA DO NA DO DO DO NA NA NA
LYS D:510 NA:NA DO NA DO DO DO NA NA NA
3s9n 2 P02787 99.41 0.0 X-RAY
 2011-08-10 LYS C:510 NA:NA DO NA DO DO DO NA NA NA
LYS D:510 NA:NA DO NA DO DO DO NA NA NA
2hau 1 P02787 99.7 0.0 X-RAY
 2006-06-27 LYS A:493 A:496 126.0 0.63 T -73.0 3.7 126.0 0.63 0.0
LYS B:493 B:496 136.0 0.68 S -80.6 -32.8 NA NA NA
3v89 2 P02787 100.0 0.0 X-RAY
 2012-02-15 LYS B:160 B:496 57.0 NA S -59.3 -36.5 57.0 NA NA
3skp 1 P02787 100.0 0.0 X-RAY
 2012-02-15 LYS A:159 A:496 138.0 0.69 T -59.7 -32.6 138.0 0.69 0.0 HOH
 7.245
 CD
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p02787-f1 1 P02787 99.86 0.0 LYS A:515 A:515 137.0 0.685 T -65.1 -30.4