Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133486989 . G A CCDS3080.1:NM_001063.3:c.1603Ggc>Agc_NP_001054.1:p.535G>S Homo sapiens transferrin (TF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3v83 1 P02787 100.0 0.0 X-RAY
 2012-02-15 GLY A:535 A:516 7.0 0.093 H 98.7 -177.0 7.0 0.093 0.0 BCT
FE
HOH
 6.416
8.282
3.608
 C
C
CA
 O3
FE
O
GLY B:535 B:516 6.0 0.08 H 90.7 176.6 NA NA NA
GLY C:535 C:516 6.0 0.08 H 82.6 174.7 NA NA NA
GLY D:535 D:516 5.0 0.067 H 89.0 -180.0 NA NA NA
GLY E:535 E:516 7.0 0.093 H 92.7 170.8 NA NA NA
GLY F:535 F:516 7.0 0.093 H 87.1 176.1 NA NA NA
3v8x 2 P02787 100.0 0.0 X-RAY
 2012-02-29 GLY B:535 B:516 9.0 0.12 H 84.3 172.8 9.0 0.12 0.0 HOH
 3.427
 CA
 O
6d03 2 P02787 100.0 0.0 EM
 2018-06-20 GLY C:535 C:516 14.0 0.187 H 100.0 -174.2 14.0 0.187 0.0 FE
CO3
 8.265
6.486
 C
C
 FE
O2
GLY D:535 D:516 10.0 0.133 H 95.6 -172.4 10.0 0.133 0.0 FE
CO3
 8.882
6.691
 C
C
 FE
O1
6d04 2 P02787 100.0 0.0 EM
 2018-06-20 GLY C:535 C:516 10.0 0.133 H 94.5 -157.9 10.0 0.133 0.0 FE
CO3
 8.542
7.081
 C
C
 FE
O1
GLY D:535 D:516 10.0 0.133 H 94.5 -157.9 10.0 0.133 0.0 FE
CO3
 8.534
7.075
 C
C
 FE
O1
6d05 2 P02787 100.0 0.0 EM
 2018-06-20 GLY C:535 C:516 9.0 0.12 H 79.3 -163.1 9.0 0.12 0.0 FE
CO3
 8.635
6.879
 C
CA
 FE
O1
GLY D:535 D:516 8.0 0.107 H 79.2 -163.1 8.0 0.107 0.0 FE
CO3
 8.627
6.892
 C
CA
 FE
O1
5dyh 1 P02787 99.86 0.0 X-RAY
 2016-04-27 GLY A:535 A:516 7.0 0.093 H 91.1 -174.0 7.0 0.093 0.0 CIT
CIT
4TI
CO3
 6.842
2.334
8.175
6.266
 HA2
HA3
HA2
HA2
 O4
H21
TI
O1
GLY B:535 B:516 8.0 0.107 H 91.4 -173.0 NA NA NA
6uj6 1 Q06AH7 99.71 0.0 X-RAY
 2020-09-30 GLY A:535 A:535 18.0 0.24 H 99.3 -173.0 18.0 0.24 0.0 CR
MLI
BCT
HOH
 8.300
5.371
9.785
8.640
 C
CA
CA
N
 CR
C1
O3
O
3qyt 1 P02787 100.0 0.0 X-RAY
 2012-03-14 GLY A:516 A:516 4.0 0.053 H 81.8 -177.0 4.0 0.053 0.0 FE
CO3
HOH
 8.396
6.278
9.919
 CA
CA
CA
 FE
O2
O
4x1b 1 P02787 100.0 0.0 X-RAY
 2015-04-08 GLY A:516 A:516 16.0 0.213 H 88.1 179.8 16.0 0.213 0.0 FE
MLI
HOH
 8.449
5.434
3.226
 CA
CA
CA
 FE
C1
O
4x1d 1 P02787 100.0 0.0 X-RAY
 2015-04-08 GLY A:516 A:516 19.0 0.253 H 108.0 178.9 19.0 0.253 0.0 YB
MLI
 8.701
5.928
 C
C
 YB
C1
GLY B:516 B:516 19.0 0.253 H 107.6 177.8 NA NA NA
5h52 1 P02787 100.0 0.0 X-RAY
 2017-11-08 GLY A:516 A:516 17.0 0.227 H 90.5 176.9 17.0 0.227 0.0 MLI
4TI
 5.627
8.708
 CA
CA
 C1
TI
5wtd 1 P02787 100.0 0.0 X-RAY
 2017-12-20 GLY A:516 A:516 13.0 0.173 H 95.2 -179.1 13.0 0.173 0.0 FE
MLI
HOH
 8.405
5.480
5.170
 C
C
N
 FE
C1
O
6jas 1 P02787 100.0 0.0 X-RAY
 2020-01-29 GLY A:516 A:516 15.0 0.2 H 94.9 -179.9 15.0 0.2 0.0 FE
MLI
HOH
 8.463
5.460
6.959
 C
CA
C
 FE
C1
O
4h0w 1 P02787 99.85 0.0 X-RAY
 2012-12-26 GLY A:516 A:516 4.0 0.053 H 90.0 -177.1 4.0 0.053 0.0 FE
CO3
HOH
 8.411
6.430
3.610
 C
CA
CA
 FE
O2
O
5x5p 1 P02787 99.85 0.0 X-RAY
 2018-02-21 GLY A:516 A:516 17.0 0.227 H 97.8 -177.9 17.0 0.227 0.0 MLI
FE
HOH
 5.426
8.419
9.474
 C
C
C
 C1
FE
O
5y6k 1 P02787 99.85 0.0 X-RAY
 2018-01-24 GLY A:516 A:516 17.0 0.227 H 102.3 177.9 17.0 0.227 0.0 MLI
FE
 5.691
8.528
 C
C
 C1
FE
6ctc 1 P02787 99.85 0.0 X-RAY
 2018-10-24 GLY A:516 A:516 6.0 0.08 H 98.4 174.7 6.0 0.08 0.0 FE
CO3
HOH
 8.463
6.429
3.476
 C
C
CA
 FE
O2
O
3ve1 2 P02787 99.71 0.0 X-RAY
 2012-02-22 GLY B:516 B:516 5.0 0.067 H 81.8 177.0 5.0 0.067 0.0 CO3
FE
HOH
 6.407
8.328
3.727
 CA
C
C
 O1
FE
O
GLY D:516 D:516 6.0 0.08 H 82.7 175.3 NA NA NA
6soy 3 P02787 100.0 0.0 X-RAY
 2019-11-06 GLY C:514 C:516 5.0 0.067 H 96.8 -179.3 5.0 0.067 0.0 FE
 8.264
 C
 FE
6soz 3 P02787 100.0 0.0 X-RAY
 2019-11-06 GLY C:514 C:516 7.0 0.093 S 97.8 179.7 7.0 0.093 0.0 FE
 8.235
 C
 FE
2hav 1 P02787 100.0 0.0 X-RAY
 2006-06-27 GLY A:513 A:516 10.0 0.133 H 89.1 -179.3 10.0 0.133 0.0 CIT
CIT
 8.907
2.824
 CA
C
 O2
O4
GLY B:513 B:516 11.0 0.147 H 100.2 179.2 NA NA NA
3s9l 2 P02787 99.41 0.0 X-RAY
 2011-08-10 GLY C:530 NA:NA DO NA DO DO DO NA NA NA
GLY D:530 NA:NA DO NA DO DO DO NA NA NA
3s9m 2 P02787 99.41 0.0 X-RAY
 2011-08-10 GLY C:530 NA:NA DO NA DO DO DO NA NA NA
GLY D:530 NA:NA DO NA DO DO DO NA NA NA
3s9n 2 P02787 99.41 0.0 X-RAY
 2011-08-10 GLY C:530 NA:NA DO NA DO DO DO NA NA NA
GLY D:530 NA:NA DO NA DO DO DO NA NA NA
2hau 1 P02787 99.7 0.0 X-RAY
 2006-06-27 GLY A:513 A:516 8.0 0.107 H 85.3 -170.8 8.0 0.107 0.0 CIT
 8.516
 CA
 O1
GLY B:513 B:516 11.0 0.147 H 93.9 172.6 NA NA NA
3v89 2 P02787 100.0 0.0 X-RAY
 2012-02-15 GLY B:180 B:516 16.0 0.213 H 94.5 178.1 16.0 0.213 0.0
3skp 1 P02787 100.0 0.0 X-RAY
 2012-02-15 GLY A:179 A:516 19.0 0.253 H 91.1 178.1 19.0 0.253 0.0 SO4
SO4
HOH
 8.549
3.309
3.524
 CA
C
CA
 O4
O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p02787-f1 1 P02787 99.86 0.0 GLY A:535 A:535 6.0 0.08 H 77.9 -172.0