Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133495956 . A C CCDS3080.1:NM_001063.3:c.1936Aag>Cag_NP_001054.1:p.646K>Q Homo sapiens transferrin (TF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3v83 1 P02787 100.0 0.0 X-RAY
 2012-02-15 LYS A:646 A:627 77.0 0.385 S -95.6 -5.4 77.0 0.385 0.0 HOH
 2.813
 O
 O
LYS B:646 B:627 81.0 0.405 S -106.9 14.0 NA NA NA
LYS C:646 C:627 82.0 0.41 S -101.7 9.3 NA NA NA
LYS D:646 D:627 86.0 0.43 S -94.4 -9.6 NA NA NA
LYS E:646 E:627 73.0 0.365 S -107.5 7.5 NA NA NA
LYS F:646 F:627 75.0 0.375 S -106.5 4.1 NA NA NA
3v8x 2 P02787 100.0 0.0 X-RAY
 2012-02-29 LYS B:646 B:627 152.0 0.76 S -146.3 135.6 147.0 0.735 0.025 A:Q9K0U9:0.025
 MAN
NAG
HOH
 7.349
3.614
4.589
 CE
NZ
CA
 O4
O6
O
6d03 2 P02787 100.0 0.0 EM
 2018-06-20 LYS C:646 C:627 102.0 0.51 S -93.6 -1.8 102.0 0.51 0.0
LYS D:646 D:627 83.0 0.415 S -112.6 -3.7 83.0 0.415 0.0
6d04 2 P02787 100.0 0.0 EM
 2018-06-20 LYS C:646 C:627 96.0 0.48 S -115.8 3.2 96.0 0.48 0.0 NAG
 9.608
 NZ
 C8
LYS D:646 D:627 95.0 0.475 S -115.8 3.2 95.0 0.475 0.0 NAG
 9.495
 NZ
 C8
6d05 2 P02787 100.0 0.0 EM
 2018-06-20 LYS C:646 C:627 93.0 0.465 S -89.0 -7.1 93.0 0.465 0.0
LYS D:646 D:627 94.0 0.47 S -89.1 -7.1 94.0 0.47 0.0
5dyh 1 P02787 99.86 0.0 X-RAY
 2016-04-27 LYS A:646 A:627 138.0 0.69 S -164.5 131.6 138.0 0.69 0.0 CIT
CIT
 6.805
8.811
 HZ1
HZ1
 O3
O2
LYS B:646 B:627 139.0 0.695 S -164.2 132.2 NA NA NA
6uj6 1 Q06AH7 99.71 0.0 X-RAY
 2020-09-30 LYS A:646 A:646 106.0 0.53 S -168.1 133.0 106.0 0.53 0.0 BCT
HOH
 7.392
8.534
 O
NZ
 O1
O
3qyt 1 P02787 100.0 0.0 X-RAY
 2012-03-14 LYS A:627 A:627 63.0 0.315 S -125.7 10.3 63.0 0.315 0.0 HOH
 7.541
 NZ
 O
4x1b 1 P02787 100.0 0.0 X-RAY
 2015-04-08 LYS A:627 A:627 110.0 0.55 S -161.4 128.1 110.0 0.55 0.0 HOH
 3.057
 CE
 O
4x1d 1 P02787 100.0 0.0 X-RAY
 2015-04-08 LYS A:627 A:627 62.0 NA S -174.9 126.8 62.0 NA NA HOH
 8.948
 O
 O
LYS B:627 B:627 62.0 NA S -175.0 127.3 NA NA NA
5h52 1 P02787 100.0 0.0 X-RAY
 2017-11-08 LYS A:627 A:627 123.0 0.615 S -163.0 137.7 123.0 0.615 0.0 HOH
 9.032
 O
 O
5wtd 1 P02787 100.0 0.0 X-RAY
 2017-12-20 LYS A:627 A:627 163.0 0.815 S -143.8 122.8 163.0 0.815 0.0 HOH
 6.179
 CE
 O
6jas 1 P02787 100.0 0.0 X-RAY
 2020-01-29 LYS A:627 A:627 90.0 0.45 S -162.8 111.8 90.0 0.45 0.0 MLI
HOH
 8.898
4.777
 NZ
NZ
 C1
O
4h0w 1 P02787 99.85 0.0 X-RAY
 2012-12-26 LYS A:627 A:627 81.0 0.405 S -108.9 7.9 81.0 0.405 0.0 CO3
HOH
 9.947
2.698
 O
O
 O2
O
5x5p 1 P02787 99.85 0.0 X-RAY
 2018-02-21 LYS A:627 A:627 104.0 0.52 S -158.4 122.9 104.0 0.52 0.0 HOH
 8.638
 NZ
 O
5y6k 1 P02787 99.85 0.0 X-RAY
 2018-01-24 LYS A:627 A:627 159.0 0.795 S -137.4 127.5 159.0 0.795 0.0
6ctc 1 P02787 99.85 0.0 X-RAY
 2018-10-24 LYS A:627 A:627 80.0 0.4 S -108.6 8.4 80.0 0.4 0.0 CO3
HOH
 9.825
2.718
 O
O
 O2
O
3ve1 2 P02787 99.71 0.0 X-RAY
 2012-02-22 LYS B:627 B:627 58.0 0.29 S -95.6 -3.5 22.0 0.11 0.18 A:Q09057:0.18
 HOH
 4.316
 C
 O
LYS D:627 D:627 57.0 0.285 S -97.3 -3.5 NA NA NA
6soy 3 P02787 100.0 0.0 X-RAY
 2019-11-06 LYS C:625 C:627 117.0 0.585 360.0 -40.5 117.0 0.585 0.0 HOH
 4.805
 CB
 O
6soz 3 P02787 100.0 0.0 X-RAY
 2019-11-06 LYS C:625 C:627 125.0 0.625 360.0 -37.8 125.0 0.625 0.0
2hav 1 P02787 100.0 0.0 X-RAY
 2006-06-27 LYS A:624 A:627 137.0 0.685 S 178.2 118.5 137.0 0.685 0.0 CIT
CIT
 8.967
8.997
 NZ
NZ
 O7
O2
LYS B:624 B:627 130.0 0.65 S -159.1 133.3 NA NA NA
3s9l 2 P02787 99.41 0.0 X-RAY
 2011-08-10 LYS C:641 C:627 62.0 NA S -153.2 113.5 62.0 NA NA
LYS D:641 D:627 86.0 NA T -48.2 138.5 NA NA NA
3s9m 2 P02787 99.41 0.0 X-RAY
 2011-08-10 LYS C:641 C:627 65.0 NA S -152.5 124.4 65.0 NA NA
LYS D:641 D:627 76.0 NA T -61.0 137.3 NA NA NA
3s9n 2 P02787 99.41 0.0 X-RAY
 2011-08-10 LYS C:641 C:627 67.0 NA S -156.3 119.2 67.0 NA NA
LYS D:641 D:627 78.0 NA S -52.1 128.2 NA NA NA
2hau 1 P02787 99.7 0.0 X-RAY
 2006-06-27 LYS A:624 A:627 142.0 0.71 S -151.1 156.9 142.0 0.71 0.0 CIT
 9.361
 CE
 O7
LYS B:624 B:627 158.0 0.79 S -120.1 140.7 NA NA NA
3v89 2 P02787 100.0 0.0 X-RAY
 2012-02-15 LYS B:291 B:627 49.0 NA S -139.2 -170.1 49.0 NA NA
3skp 1 P02787 100.0 0.0 X-RAY
 2012-02-15 LYS A:290 A:627 138.0 0.69 S -150.0 130.4 138.0 0.69 0.0 SO4
SO4
HOH
 8.113
4.744
2.660
 CE
O
O
 O1
O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p02787-f1 1 P02787 99.86 0.0 LYS A:646 A:646 83.0 0.415 S -111.5 1.1