Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133495978 . A C CCDS3080.1:NM_001063.3:c.1958gAc>gCc_NP_001054.1:p.653D>A Homo sapiens transferrin (TF), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3v83 1 P02787 100.0 0.0 X-RAY
2012-02-15 ASP A:653 A:634 29.0 0.193 T -92.6 16.4 29.0 0.193 0.0 FE
HOH
8.884
3.926
OD1
OD2
FE
O
ASP B:653 B:634 29.0 0.193 T -98.2 9.4 NA NA NA
ASP C:653 C:634 24.0 0.16 T -93.3 11.1 NA NA NA
ASP D:653 D:634 27.0 0.18 T -93.6 16.1 NA NA NA
ASP E:653 E:634 23.0 0.153 T -95.4 16.5 NA NA NA
ASP F:653 F:634 25.0 0.167 T -97.1 15.4 NA NA NA
3v8x 2 P02787 100.0 0.0 X-RAY
2012-02-29 ASP B:653 B:634 107.0 0.713 T -104.4 22.5 62.0 0.413 0.3 A:Q9K0U9:0.3
NAG
NAG
NAG
HOH
6.682
4.907
9.532
2.972
CA
CB
OD2
OD2
O6
C8
O6
O
6d03 2 P02787 100.0 0.0 EM
2018-06-20 ASP C:653 C:634 33.0 0.22 T -98.6 35.7 33.0 0.22 0.0 FE
CO3
9.082
9.664
OD1
OD1
FE
O1
ASP D:653 D:634 14.0 0.093 T -88.0 10.5 14.0 0.093 0.0 FE
CO3
8.282
9.521
OD2
OD2
FE
O1
6d04 2 P02787 100.0 0.0 EM
2018-06-20 ASP C:653 C:634 30.0 0.2 T -91.8 16.0 30.0 0.2 0.0 FE
8.836
OD1
FE
ASP D:653 D:634 32.0 0.213 T -91.9 16.1 32.0 0.213 0.0 FE
8.850
OD1
FE
6d05 2 P02787 100.0 0.0 EM
2018-06-20 ASP C:653 C:634 31.0 0.207 T -104.1 13.9 31.0 0.207 0.0 FE
9.084
OD1
FE
ASP D:653 D:634 31.0 0.207 T -104.1 13.9 31.0 0.207 0.0 FE
9.060
OD1
FE
5dyh 1 P02787 99.86 0.0 X-RAY
2016-04-27 ASP A:653 A:634 80.0 0.533 T -85.1 15.5 80.0 0.533 0.0 CIT
7.323
OD2
O5
ASP B:653 B:634 76.0 0.507 T -85.7 15.6 NA NA NA
6uj6 1 Q06AH7 99.71 0.0 X-RAY
2020-09-30 ASP A:653 A:653 39.0 0.26 T -78.9 32.2 39.0 0.26 0.0 CR
MLI
BCT
HOH
9.210
9.150
8.068
3.775
OD1
OD1
OD1
O
CR
O7
O2
O
3qyt 1 P02787 100.0 0.0 X-RAY
2012-03-14 ASP A:634 A:634 32.0 0.213 T -104.7 9.8 32.0 0.213 0.0 FE
HOH
8.995
8.564
OD1
OD1
FE
O
4x1b 1 P02787 100.0 0.0 X-RAY
2015-04-08 ASP A:634 A:634 39.0 0.26 T -61.7 -17.2 39.0 0.26 0.0 FE
MLI
HOH
9.381
9.791
5.528
OD2
OD2
OD2
FE
O9
O
4x1d 1 P02787 100.0 0.0 X-RAY
2015-04-08 ASP A:634 A:634 35.0 0.233 S -62.1 -7.2 35.0 0.233 0.0 YB
MLI
HOH
8.553
8.947
8.997
OD2
OD2
OD2
YB
O9
O
ASP B:634 B:634 40.0 0.267 S -61.5 -6.9 NA NA NA
5h52 1 P02787 100.0 0.0 X-RAY
2017-11-08 ASP A:634 A:634 32.0 0.213 T -94.7 35.5 32.0 0.213 0.0 MLI
4TI
HOH
9.533
8.976
8.634
OD2
OD2
OD1
O9
TI
O
5wtd 1 P02787 100.0 0.0 X-RAY
2017-12-20 ASP A:634 A:634 36.0 0.24 T -63.0 -31.3 36.0 0.24 0.0 FE
MLI
HOH
8.913
8.813
4.873
OD2
OD2
OD2
FE
O9
O
6jas 1 P02787 100.0 0.0 X-RAY
2020-01-29 ASP A:634 A:634 50.0 0.333 T -81.6 8.8 50.0 0.333 0.0 FE
MLI
HOH
8.987
9.320
6.999
OD2
OD1
OD2
FE
O9
O
4h0w 1 P02787 99.85 0.0 X-RAY
2012-12-26 ASP A:634 A:634 33.0 0.22 T -88.2 12.6 33.0 0.22 0.0 FE
CO3
HOH
8.736
9.838
2.653
OD1
OD1
O
FE
O2
O
5x5p 1 P02787 99.85 0.0 X-RAY
2018-02-21 ASP A:634 A:634 37.0 0.247 T -104.4 31.6 37.0 0.247 0.0 MLI
FE
HOH
9.223
9.170
4.454
OD1
OD1
OD1
O9
FE
O
5y6k 1 P02787 99.85 0.0 X-RAY
2018-01-24 ASP A:634 A:634 43.0 0.287 T -60.7 -21.1 43.0 0.287 0.0 FE
9.652
OD1
FE
6ctc 1 P02787 99.85 0.0 X-RAY
2018-10-24 ASP A:634 A:634 30.0 0.2 T -93.9 19.9 30.0 0.2 0.0 FE
CO3
HOH
8.828
9.917
8.575
OD1
OD2
OD1
FE
O3
O
3ve1 2 P02787 99.71 0.0 X-RAY
2012-02-22 ASP B:634 B:634 32.0 0.213 T -91.1 5.2 32.0 0.213 0.0 CO3
FE
HOH
9.651
8.647
3.797
OD1
OD1
CG
O1
FE
O
ASP D:634 D:634 31.0 0.207 T -91.3 7.4 NA NA NA
6soy 3 P02787 100.0 0.0 X-RAY
2019-11-06 ASP C:632 C:634 27.0 0.18 T -98.9 22.8 27.0 0.18 0.0 FE
HOH
8.972
6.869
OD1
N
FE
O
6soz 3 P02787 100.0 0.0 X-RAY
2019-11-06 ASP C:632 C:634 27.0 0.18 T -94.8 20.7 27.0 0.18 0.0 FE
8.928
OD1
FE
2hav 1 P02787 100.0 0.0 X-RAY
2006-06-27 ASP A:631 A:634 81.0 0.54 T -84.7 27.9 81.0 0.54 0.0 CIT
CIT
7.510
9.787
OD2
OD2
O4
O2
ASP B:631 B:634 78.0 0.52 T -88.8 10.7 NA NA NA
3s9l 2 P02787 99.41 0.0 X-RAY
2011-08-10 ASP C:648 C:634 99.0 0.66 T -81.8 16.9 99.0 0.66 0.0
ASP D:648 D:634 106.0 0.707 T -83.8 -5.4 NA NA NA
3s9m 2 P02787 99.41 0.0 X-RAY
2011-08-10 ASP C:648 C:634 107.0 0.713 T -81.8 15.4 107.0 0.713 0.0
ASP D:648 D:634 103.0 0.687 T -91.6 33.3 NA NA NA
3s9n 2 P02787 99.41 0.0 X-RAY
2011-08-10 ASP C:648 C:634 97.0 0.647 T -89.8 21.6 97.0 0.647 0.0
ASP D:648 D:634 82.0 0.547 T -88.9 22.8 NA NA NA
2hau 1 P02787 99.7 0.0 X-RAY
2006-06-27 ASP A:631 A:634 78.0 0.52 T -101.6 24.1 78.0 0.52 0.0 CIT
6.308
OD1
O5
ASP B:631 B:634 96.0 0.64 T -77.6 -14.0 NA NA NA
3v89 2 P02787 100.0 0.0 X-RAY
2012-02-15 ASP B:298 B:634 84.0 0.56 T -64.2 -5.9 59.0 0.393 0.167 A:Q9JPJ0:0.167
3skp 1 P02787 100.0 0.0 X-RAY
2012-02-15 ASP A:297 A:634 106.0 0.707 T -77.5 -9.0 106.0 0.707 0.0 SO4
SO4
SO4
HOH
8.568
8.241
8.432
2.761
OD2
OD2
OD2
O
O4
O1
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p02787-f1 1 P02787 99.86 0.0 ASP A:653 A:653 24.0 0.16 T -103.2 11.6