Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr3 | 133495978 | . | A | C | CCDS3080.1:NM_001063.3:c.1958gAc>gCc_NP_001054.1:p.653D>A | Homo sapiens transferrin (TF), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3v83 | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2012-02-15 | ASP | A:653 | A:634 | 29.0 | 0.193 | T | -92.6 | 16.4 | 29.0 | 0.193 | 0.0 |
FE HOH |
8.884 3.926 |
OD1 OD2 |
FE O |
||
ASP | B:653 | B:634 | 29.0 | 0.193 | T | -98.2 | 9.4 | NA | NA | NA | |||||||||||||
ASP | C:653 | C:634 | 24.0 | 0.16 | T | -93.3 | 11.1 | NA | NA | NA | |||||||||||||
ASP | D:653 | D:634 | 27.0 | 0.18 | T | -93.6 | 16.1 | NA | NA | NA | |||||||||||||
ASP | E:653 | E:634 | 23.0 | 0.153 | T | -95.4 | 16.5 | NA | NA | NA | |||||||||||||
ASP | F:653 | F:634 | 25.0 | 0.167 | T | -97.1 | 15.4 | NA | NA | NA | |||||||||||||
3v8x | 2 | P02787 | 100.0 | 0.0 |
X-RAY |
2012-02-29 | ASP | B:653 | B:634 | 107.0 | 0.713 | T | -104.4 | 22.5 | 62.0 | 0.413 | 0.3 |
A:Q9K0U9:0.3 |
NAG NAG NAG HOH |
6.682 4.907 9.532 2.972 |
CA CB OD2 OD2 |
O6 C8 O6 O |
|
6d03 | 2 | P02787 | 100.0 | 0.0 |
EM |
2018-06-20 | ASP | C:653 | C:634 | 33.0 | 0.22 | T | -98.6 | 35.7 | 33.0 | 0.22 | 0.0 |
FE CO3 |
9.082 9.664 |
OD1 OD1 |
FE O1 |
||
ASP | D:653 | D:634 | 14.0 | 0.093 | T | -88.0 | 10.5 | 14.0 | 0.093 | 0.0 |
FE CO3 |
8.282 9.521 |
OD2 OD2 |
FE O1 |
|||||||||
6d04 | 2 | P02787 | 100.0 | 0.0 |
EM |
2018-06-20 | ASP | C:653 | C:634 | 30.0 | 0.2 | T | -91.8 | 16.0 | 30.0 | 0.2 | 0.0 |
FE |
8.836 |
OD1 |
FE |
||
ASP | D:653 | D:634 | 32.0 | 0.213 | T | -91.9 | 16.1 | 32.0 | 0.213 | 0.0 |
FE |
8.850 |
OD1 |
FE |
|||||||||
6d05 | 2 | P02787 | 100.0 | 0.0 |
EM |
2018-06-20 | ASP | C:653 | C:634 | 31.0 | 0.207 | T | -104.1 | 13.9 | 31.0 | 0.207 | 0.0 |
FE |
9.084 |
OD1 |
FE |
||
ASP | D:653 | D:634 | 31.0 | 0.207 | T | -104.1 | 13.9 | 31.0 | 0.207 | 0.0 |
FE |
9.060 |
OD1 |
FE |
|||||||||
5dyh | 1 | P02787 | 99.86 | 0.0 |
X-RAY |
2016-04-27 | ASP | A:653 | A:634 | 80.0 | 0.533 | T | -85.1 | 15.5 | 80.0 | 0.533 | 0.0 |
CIT |
7.323 |
OD2 |
O5 |
||
ASP | B:653 | B:634 | 76.0 | 0.507 | T | -85.7 | 15.6 | NA | NA | NA | |||||||||||||
6uj6 | 1 | Q06AH7 | 99.71 | 0.0 |
X-RAY |
2020-09-30 | ASP | A:653 | A:653 | 39.0 | 0.26 | T | -78.9 | 32.2 | 39.0 | 0.26 | 0.0 |
CR MLI BCT HOH |
9.210 9.150 8.068 3.775 |
OD1 OD1 OD1 O |
CR O7 O2 O |
||
3qyt | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2012-03-14 | ASP | A:634 | A:634 | 32.0 | 0.213 | T | -104.7 | 9.8 | 32.0 | 0.213 | 0.0 |
FE HOH |
8.995 8.564 |
OD1 OD1 |
FE O |
||
4x1b | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2015-04-08 | ASP | A:634 | A:634 | 39.0 | 0.26 | T | -61.7 | -17.2 | 39.0 | 0.26 | 0.0 |
FE MLI HOH |
9.381 9.791 5.528 |
OD2 OD2 OD2 |
FE O9 O |
||
4x1d | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2015-04-08 | ASP | A:634 | A:634 | 35.0 | 0.233 | S | -62.1 | -7.2 | 35.0 | 0.233 | 0.0 |
YB MLI HOH |
8.553 8.947 8.997 |
OD2 OD2 OD2 |
YB O9 O |
||
ASP | B:634 | B:634 | 40.0 | 0.267 | S | -61.5 | -6.9 | NA | NA | NA | |||||||||||||
5h52 | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2017-11-08 | ASP | A:634 | A:634 | 32.0 | 0.213 | T | -94.7 | 35.5 | 32.0 | 0.213 | 0.0 |
MLI 4TI HOH |
9.533 8.976 8.634 |
OD2 OD2 OD1 |
O9 TI O |
||
5wtd | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2017-12-20 | ASP | A:634 | A:634 | 36.0 | 0.24 | T | -63.0 | -31.3 | 36.0 | 0.24 | 0.0 |
FE MLI HOH |
8.913 8.813 4.873 |
OD2 OD2 OD2 |
FE O9 O |
||
6jas | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2020-01-29 | ASP | A:634 | A:634 | 50.0 | 0.333 | T | -81.6 | 8.8 | 50.0 | 0.333 | 0.0 |
FE MLI HOH |
8.987 9.320 6.999 |
OD2 OD1 OD2 |
FE O9 O |
||
4h0w | 1 | P02787 | 99.85 | 0.0 |
X-RAY |
2012-12-26 | ASP | A:634 | A:634 | 33.0 | 0.22 | T | -88.2 | 12.6 | 33.0 | 0.22 | 0.0 |
FE CO3 HOH |
8.736 9.838 2.653 |
OD1 OD1 O |
FE O2 O |
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5x5p | 1 | P02787 | 99.85 | 0.0 |
X-RAY |
2018-02-21 | ASP | A:634 | A:634 | 37.0 | 0.247 | T | -104.4 | 31.6 | 37.0 | 0.247 | 0.0 |
MLI FE HOH |
9.223 9.170 4.454 |
OD1 OD1 OD1 |
O9 FE O |
||
5y6k | 1 | P02787 | 99.85 | 0.0 |
X-RAY |
2018-01-24 | ASP | A:634 | A:634 | 43.0 | 0.287 | T | -60.7 | -21.1 | 43.0 | 0.287 | 0.0 |
FE |
9.652 |
OD1 |
FE |
||
6ctc | 1 | P02787 | 99.85 | 0.0 |
X-RAY |
2018-10-24 | ASP | A:634 | A:634 | 30.0 | 0.2 | T | -93.9 | 19.9 | 30.0 | 0.2 | 0.0 |
FE CO3 HOH |
8.828 9.917 8.575 |
OD1 OD2 OD1 |
FE O3 O |
||
3ve1 | 2 | P02787 | 99.71 | 0.0 |
X-RAY |
2012-02-22 | ASP | B:634 | B:634 | 32.0 | 0.213 | T | -91.1 | 5.2 | 32.0 | 0.213 | 0.0 |
CO3 FE HOH |
9.651 8.647 3.797 |
OD1 OD1 CG |
O1 FE O |
||
ASP | D:634 | D:634 | 31.0 | 0.207 | T | -91.3 | 7.4 | NA | NA | NA | |||||||||||||
6soy | 3 | P02787 | 100.0 | 0.0 |
X-RAY |
2019-11-06 | ASP | C:632 | C:634 | 27.0 | 0.18 | T | -98.9 | 22.8 | 27.0 | 0.18 | 0.0 |
FE HOH |
8.972 6.869 |
OD1 N |
FE O |
||
6soz | 3 | P02787 | 100.0 | 0.0 |
X-RAY |
2019-11-06 | ASP | C:632 | C:634 | 27.0 | 0.18 | T | -94.8 | 20.7 | 27.0 | 0.18 | 0.0 |
FE |
8.928 |
OD1 |
FE |
||
2hav | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2006-06-27 | ASP | A:631 | A:634 | 81.0 | 0.54 | T | -84.7 | 27.9 | 81.0 | 0.54 | 0.0 |
CIT CIT |
7.510 9.787 |
OD2 OD2 |
O4 O2 |
||
ASP | B:631 | B:634 | 78.0 | 0.52 | T | -88.8 | 10.7 | NA | NA | NA | |||||||||||||
3s9l | 2 | P02787 | 99.41 | 0.0 |
X-RAY |
2011-08-10 | ASP | C:648 | C:634 | 99.0 | 0.66 | T | -81.8 | 16.9 | 99.0 | 0.66 | 0.0 | ||||||
ASP | D:648 | D:634 | 106.0 | 0.707 | T | -83.8 | -5.4 | NA | NA | NA | |||||||||||||
3s9m | 2 | P02787 | 99.41 | 0.0 |
X-RAY |
2011-08-10 | ASP | C:648 | C:634 | 107.0 | 0.713 | T | -81.8 | 15.4 | 107.0 | 0.713 | 0.0 | ||||||
ASP | D:648 | D:634 | 103.0 | 0.687 | T | -91.6 | 33.3 | NA | NA | NA | |||||||||||||
3s9n | 2 | P02787 | 99.41 | 0.0 |
X-RAY |
2011-08-10 | ASP | C:648 | C:634 | 97.0 | 0.647 | T | -89.8 | 21.6 | 97.0 | 0.647 | 0.0 | ||||||
ASP | D:648 | D:634 | 82.0 | 0.547 | T | -88.9 | 22.8 | NA | NA | NA | |||||||||||||
2hau | 1 | P02787 | 99.7 | 0.0 |
X-RAY |
2006-06-27 | ASP | A:631 | A:634 | 78.0 | 0.52 | T | -101.6 | 24.1 | 78.0 | 0.52 | 0.0 |
CIT |
6.308 |
OD1 |
O5 |
||
ASP | B:631 | B:634 | 96.0 | 0.64 | T | -77.6 | -14.0 | NA | NA | NA | |||||||||||||
3v89 | 2 | P02787 | 100.0 | 0.0 |
X-RAY |
2012-02-15 | ASP | B:298 | B:634 | 84.0 | 0.56 | T | -64.2 | -5.9 | 59.0 | 0.393 | 0.167 |
A:Q9JPJ0:0.167 |
|||||
3skp | 1 | P02787 | 100.0 | 0.0 |
X-RAY |
2012-02-15 | ASP | A:297 | A:634 | 106.0 | 0.707 | T | -77.5 | -9.0 | 106.0 | 0.707 | 0.0 |
SO4 SO4 SO4 HOH |
8.568 8.241 8.432 2.761 |
OD2 OD2 OD2 O |
O4 O1 O2 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p02787-f1 | 1 | P02787 | 99.86 | 0.0 | ASP | A:653 | A:653 | 24.0 | 0.16 | T | -103.2 | 11.6 |