Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 187451364 . G A CCDS3289.1:NM_001130845.1:c.118Cgt>Tgt_NP_001124317.1:p.40R>C Homo sapiens B-cell CLL/lymphoma 6 (BCL6), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6xmx 1 P41182 99.72 0.0 EM
2020-11-25 ARG A:80 A:40 233.0 1.0 T -99.5 2.2 218.0 0.969 0.031 D:P41182:0.013
C:P41182:0.058
U52
8.087
H
H10
ARG B:80 B:40 233.0 1.0 T -99.6 2.2 220.0 0.978 0.022 F:P41182:0.053
U52
8.636
H
H10
ARG C:80 C:40 232.0 1.0 T -99.5 2.2 232.0 1.0 0.0
ARG D:80 D:40 233.0 1.0 T -99.6 2.2 216.0 0.96 0.04 B:P41182:0.076
U52
9.307
H
H10
ARG E:80 E:40 234.0 1.0 T -99.7 2.3 217.0 0.964 0.036 A:P41182:0.067
B:P41182:0.013
U52
8.261
HB2
H10
ARG F:80 F:40 233.0 1.0 T -99.6 2.2 225.0 1.0 0.0 H:P41182:0.036
U52
9.304
H
H10
ARG G:80 G:40 230.0 1.0 T -99.6 2.2 217.0 0.964 0.036 F:P41182:0.009
E:P41182:0.053
U52
8.602
H
H10
ARG H:80 H:40 231.0 1.0 T -99.6 2.2 231.0 1.0 0.0
5h7g 1 P41182 100.0 1e-85 X-RAY
2016-12-07 ARG A:52 A:40 231.0 1.0 T -119.5 -8.5 231.0 1.0 0.0 HOH
2.898
N
O
ARG B:52 B:40 236.0 1.0 T -96.2 -1.9 236.0 1.0 0.0
5h7h 1 P41182 100.0 1e-85 X-RAY
2016-12-07 ARG A:52 A:40 230.0 1.0 T -79.5 -17.4 230.0 1.0 0.0 HOH
2.960
N
O
5x4m 1 P41182 100.0 1e-85 X-RAY
2017-05-24 ARG A:52 A:40 232.0 1.0 T 62.2 13.0 232.0 1.0 0.0 HOH
2.750
NH2
O
5x4n 1 P41182 100.0 1e-85 X-RAY
2017-05-24 ARG A:52 A:40 237.0 1.0 T 65.8 15.6 237.0 1.0 0.0 HOH
2.771
N
O
5x4o 1 P41182 100.0 1e-85 X-RAY
2017-05-24 ARG A:52 A:40 233.0 1.0 T 66.8 14.4 233.0 1.0 0.0 HOH
2.733
N
O
5x4p 1 P41182 100.0 1e-85 X-RAY
2017-05-24 ARG A:52 A:40 235.0 1.0 T 75.3 -3.2 235.0 1.0 0.0 HOH
2.678
N
O
5x4q 1 P41182 100.0 1e-85 X-RAY
2017-05-24 ARG A:52 A:40 236.0 1.0 T 67.1 14.3 236.0 1.0 0.0 K
HOH
7.780
2.866
N
N
K
O
5x9o 1 P41182 100.0 1e-85 X-RAY
2017-08-16 ARG A:52 A:40 221.0 0.982 T 73.8 4.7 221.0 0.982 0.0 K
HOH
7.493
2.693
N
O
K
O
5x9p 1 P41182 100.0 1e-85 X-RAY
2017-08-16 ARG A:52 A:40 233.0 1.0 T 64.4 13.9 233.0 1.0 0.0 HOH
2.727
N
O
6toj 1 P41182 100.0 1e-85 X-RAY
2020-04-22 ARG A:55 A:40 222.0 0.987 T -98.0 19.1 222.0 0.987 0.0 EDO
HOH
6.334
2.805
O
NH2
O1
O
6tol 1 P41182 100.0 1e-85 X-RAY
2020-04-22 ARG A:55 A:40 231.0 1.0 T -68.1 -37.8 231.0 1.0 0.0 EDO
EDO
DMS
HOH
7.646
6.803
7.947
2.825
O
N
C
NH1
O1
O1
O
O
6tom 1 P41182 100.0 1e-85 X-RAY
2020-04-22 ARG A:55 A:40 230.0 1.0 T -67.1 -37.5 230.0 1.0 0.0 EDO
HOH
6.526
2.705
N
NH2
O1
O
7okd 1 P41182 100.0 1e-85 X-RAY
2021-12-08 ARG A:55 A:40 235.0 1.0 T -82.7 1.4 235.0 1.0 0.0 EDO
DMS
HOH
8.588
7.445
2.809
O
C
NH1
C2
C1
O
6tof 1 P41182 100.0 2e-85 X-RAY
2020-04-22 ARG A:39 A:40 233.0 1.0 T 74.1 6.4 233.0 1.0 0.0 HOH
2.751
O
O
6tog 1 P41182 100.0 2e-85 X-RAY
2020-04-22 ARG A:39 A:40 236.0 1.0 T 70.6 1.8 236.0 1.0 0.0 HOH
2.792
N
O
6toh 1 P41182 100.0 2e-85 X-RAY
2020-04-22 ARG A:39 A:40 236.0 1.0 T -87.4 -3.3 236.0 1.0 0.0 HOH
2.773
NH1
O
6toi 1 P41182 100.0 2e-85 X-RAY
2020-04-22 ARG A:39 A:40 241.0 1.0 T -66.9 -39.4 241.0 1.0 0.0 EDO
DMS
DMS
HOH
8.661
7.398
8.131
2.751
N
O
C
NH1
O2
O
C2
O
6tok 1 P41182 100.0 2e-85 X-RAY
2020-04-22 ARG A:39 A:40 230.0 1.0 T 72.2 10.2 230.0 1.0 0.0 EDO
HOH
6.791
1.106
O
CG
O2
O
6ton 1 P41182 100.0 2e-85 X-RAY
2020-04-22 ARG A:39 A:40 99.0 NA T -89.0 -25.0 99.0 NA NA HOH
5.161
O
O
6too 1 P41182 100.0 2e-85 X-RAY
2020-04-22 ARG A:39 A:40 229.0 1.0 T 73.3 7.6 229.0 1.0 0.0 HOH
2.742
NH1
O
7oke 1 P41182 100.0 2e-85 X-RAY
2021-12-08 ARG A:39 A:40 233.0 1.0 T -78.6 -10.0 233.0 1.0 0.0 EDO
HOH
7.618
2.744
C
NH1
O2
O
7okf 1 P41182 100.0 2e-85 X-RAY
2021-12-08 ARG A:39 A:40 232.0 1.0 T -78.3 -8.3 232.0 1.0 0.0 DMS
HOH
8.212
2.731
C
NH1
C2
O
7okg 1 P41182 100.0 2e-85 X-RAY
2021-12-08 ARG A:39 A:40 236.0 1.0 T -82.3 -2.8 236.0 1.0 0.0 HOH
2.715
NH1
O
7okh 1 P41182 100.0 2e-85 X-RAY
2021-12-08 ARG A:39 A:40 230.0 1.0 T -76.8 -11.4 230.0 1.0 0.0 HOH
2.765
NH2
O
7oki 1 P41182 100.0 2e-85 X-RAY
2021-12-08 ARG A:39 A:40 229.0 1.0 T -67.3 -39.0 229.0 1.0 0.0 DMS
HOH
8.455
2.866
C
NH1
C2
O
7okj 1 P41182 100.0 2e-85 X-RAY
2021-12-08 ARG A:39 A:40 233.0 1.0 T -81.3 -3.3 233.0 1.0 0.0 HOH
2.739
NH1
O
7okk 1 P41182 100.0 2e-85 X-RAY
2021-12-08 ARG A:39 A:40 239.0 1.0 T -74.5 -13.4 239.0 1.0 0.0 EDO
HOH
7.387
2.695
C
NH2
O1
O
7okl 1 P41182 100.0 2e-85 X-RAY
2021-12-08 ARG A:39 A:40 227.0 1.0 T 70.5 13.0 227.0 1.0 0.0 EDO
HOH
7.847
2.986
CA
N
O1
O
7okm 1 P41182 100.0 2e-85 X-RAY
2021-12-08 ARG A:39 A:40 227.0 1.0 T 73.0 9.1 227.0 1.0 0.0 EDO
HOH
3.274
3.471
N
CG
O2
O
3e4u 1 P41182 100.0 2e-85 X-RAY
2008-12-09 ARG A:41 NA:NA DO NA DO DO DO NA NA NA
ARG B:41 NA:NA DO NA DO DO DO NA NA NA
ARG C:41 NA:NA DO NA DO DO DO NA NA NA
ARG D:41 NA:NA DO NA DO DO DO NA NA NA
ARG E:41 NA:NA DO NA DO DO DO NA NA NA
ARG F:41 F:40 261.0 1.0 360.0 -10.5 NA NA NA
4u2m 1 Q13105,P41182 99.21 3e-83 X-RAY
2014-12-10 ARG A:167 A:163 93.0 NA T -81.6 -41.0 93.0 NA NA HOH
4.900
O
O
ARG B:167 B:163 96.0 NA T -83.3 -40.8 NA NA NA
ARG C:167 C:163 90.0 NA T -81.5 -42.2 NA NA NA
ARG D:167 D:163 92.0 NA T -77.0 -40.4 NA NA NA
6c3l 1 P41182 96.9 2e-82 X-RAY
2019-01-16 ARG A:42 A:40 250.0 1.0 T -89.0 4.6 250.0 1.0 0.0 HOH
2.894
N
O
ARG B:42 B:40 231.0 1.0 T -92.5 8.0 NA NA NA
6c3n 1 P41182 96.9 2e-82 X-RAY
2019-01-16 ARG A:42 A:40 224.0 0.996 T -96.5 -27.3 224.0 0.996 0.0 HOH
3.176
NH2
O
ARG B:42 B:40 92.0 NA T -119.0 3.8 92.0 NA NA HOH
6.535
C
O
6cq1 1 P41182 96.9 2e-82 X-RAY
2019-03-20 ARG A:42 A:40 228.0 1.0 T -92.1 10.7 228.0 1.0 0.0 HOH
3.375
CG
O
ARG B:42 B:40 148.0 NA T -81.2 -3.3 148.0 NA NA HOH
3.130
O
O
6xwf 1 P41182 96.83 1e-80 X-RAY
2020-12-02 ARG A:46 A:40 235.0 1.0 T 71.4 -10.2 235.0 1.0 0.0 HOH
2.732
N
O
6xxs 1 P41182 96.83 1e-80 X-RAY
2020-12-02 ARG A:46 A:40 237.0 1.0 T -90.8 16.4 237.0 1.0 0.0
ARG B:46 B:40 226.0 1.0 T -87.3 -19.0 226.0 1.0 0.0
ARG G:46 F:40 238.0 1.0 T 66.0 7.7 125.0 0.556 0.444 C:O75376:0.413
B:P41182:0.213
5mw2 1 P41182 97.6 2e-80 X-RAY
2017-10-04 ARG A:37 A:40 230.0 1.0 T -132.3 -8.8 230.0 1.0 0.0 HOH
3.774
NH1
O
5mw6 1 P41182 97.6 2e-80 X-RAY
2017-10-04 ARG A:37 A:40 220.0 0.978 T 70.9 1.1 220.0 0.978 0.0 HOH
2.752
O
O
ARG B:37 B:40 211.0 0.938 T 77.3 -19.5 211.0 0.938 0.0 HOH
2.726
O
O
5mwd 1 P41182 97.6 2e-80 X-RAY
2017-10-04 ARG A:37 A:40 246.0 1.0 T -85.6 -9.3 246.0 1.0 0.0 HOH
2.692
O
O
1r28 1 P41182 97.6 2e-80 X-RAY
2003-12-23 ARG A:38 A:40 220.0 0.978 T 73.6 -9.2 220.0 0.978 0.0 HOH
2.635
O
O
ARG B:38 B:40 218.0 0.969 T -138.6 -15.7 218.0 0.969 0.0 HOH
2.947
O
O
1r29 1 P41182 97.6 2e-80 X-RAY
2003-12-23 ARG A:38 A:40 242.0 1.0 T -88.1 -0.8 242.0 1.0 0.0 HOH
2.497
NH1
O
1r2b 1 P41182 97.6 2e-80 X-RAY
2003-12-23 ARG A:38 A:40 238.0 1.0 T -96.6 3.5 238.0 1.0 0.0 HOH
2.817
NH2
O
ARG B:38 B:40 233.0 1.0 T -65.3 -29.7 233.0 1.0 0.0 HOH
6.982
N
O
3bim 1 P41182 97.6 2e-80 X-RAY
2008-01-08 ARG A:38 A:40 230.0 1.0 T -93.2 -8.1 NA NA NA
ARG C:38 B:40 238.0 1.0 T -112.6 14.2 NA NA NA
ARG E:38 C:40 216.0 0.96 T -56.9 -52.7 216.0 0.96 0.0
ARG G:38 D:40 243.0 1.0 T -105.6 16.1 243.0 1.0 0.0 HOH
4.503
O
O
ARG I:38 E:40 236.0 1.0 T -110.7 6.5 NA NA NA
ARG K:38 F:40 221.0 0.982 T -114.6 -22.7 NA NA NA
ARG M:38 G:40 217.0 0.964 T -83.8 -48.1 NA NA NA
ARG O:38 H:40 235.0 1.0 T -102.6 -29.9 NA NA NA
3lbz 1 P41182 97.6 2e-80 X-RAY
2010-04-28 ARG A:38 A:40 230.0 1.0 T -106.4 -26.3 230.0 1.0 0.0
ARG B:38 B:40 232.0 1.0 T -108.8 -27.8 232.0 1.0 0.0 HOH
5.055
N
O
7bde 1 P41182 97.6 3e-80 X-RAY
2021-07-28 ARG A:38 A:40 244.0 1.0 T -91.2 -6.9 244.0 1.0 0.0 HOH
2.686
O
O
6ew8 1 P41182 97.58 1e-79 X-RAY
2018-10-24 ARG A:35 A:40 246.0 1.0 T -90.6 0.0 246.0 1.0 0.0 HOH
3.004
N
O
6tbt 1 P41182 97.58 1e-79 X-RAY
2021-10-13 ARG A:37 A:40 226.0 1.0 T -101.7 -3.9 226.0 1.0 0.0 CL
HOH
3.292
2.882
N
NH2
CL
O
ARG B:37 B:40 234.0 1.0 T 71.9 8.7 234.0 1.0 0.0 HOH
2.787
NH2
O
6tcj 1 P41182 97.58 1e-79 X-RAY
2021-10-13 ARG A:37 A:40 234.0 1.0 T -90.0 -3.5 234.0 1.0 0.0 HOH
3.301
O
O
ARG B:37 B:40 232.0 1.0 T -85.9 -3.5 232.0 1.0 0.0 HOH
7.013
NH2
O
6xxs 3 P41182 97.58 1e-79 X-RAY
2020-12-02 ARG E:37 E:40 228.0 1.0 T -84.0 -37.0 228.0 1.0 0.0
6xyx 1 P41182 97.58 1e-79 X-RAY
2020-12-02 ARG A:37 A:40 241.0 1.0 T -86.7 5.7 241.0 1.0 0.0 HOH
2.531
NE
O
ARG B:37 B:40 231.0 1.0 T 74.1 -9.3 231.0 1.0 0.0 NA
HOH
9.302
4.348
O
O
NA
O
6xzz 1 P41182 97.58 1e-79 X-RAY
2020-12-02 ARG A:37 A:40 241.0 1.0 T 68.7 12.7 241.0 1.0 0.0 NA
HOH
7.521
2.740
N
O
NA
O
6y17 1 O75376,P41182 96.8 1e-79 X-RAY
2020-12-02 ARG A:48 A:40 238.0 1.0 T -83.7 6.1 238.0 1.0 0.0 NA
HOH
7.260
4.627
O
N
NA
O
ARG B:48 B:40 248.0 1.0 T -89.7 6.4 248.0 1.0 0.0 HOH
3.011
N
O
6zbu 1 O75376,P41182 96.8 1e-79 X-RAY
2020-12-02 ARG A:48 A:40 169.0 0.751 T -76.1 -11.8 169.0 0.751 0.0 HOH
6.286
NH2
O
ARG B:48 B:40 238.0 1.0 T 80.4 -8.1 238.0 1.0 0.0 HOH
2.999
O
O
ARG E:48 E:40 245.0 1.0 T 67.4 -8.6 160.0 0.711 0.289 H:O75376+P41182:0.378
HOH
3.002
O
O
ARG F:48 F:40 250.0 1.0 T 47.2 1.6 250.0 1.0 0.0
ARG H:48 I:40 236.0 1.0 T 78.9 -8.1 152.0 0.676 0.324 E:O75376+P41182:0.373
SO4
HOH
9.913
4.322
O
CA
O1
O
ARG I:48 J:40 239.0 1.0 T 42.4 8.5 239.0 1.0 0.0
5n1z 1 P41182 97.56 6e-79 X-RAY
2017-05-17 ARG A:35 A:40 234.0 1.0 T -86.7 11.7 234.0 1.0 0.0 HOH
2.961
O
O
5n20 1 P41182 97.56 6e-79 X-RAY
2017-05-17 ARG A:35 A:40 249.0 1.0 T -87.3 0.4 249.0 1.0 0.0 HOH
2.711
O
O
5n21 1 P41182 97.54 5e-78 X-RAY
2017-05-17 ARG A:34 A:40 245.0 1.0 T -86.8 -2.2 245.0 1.0 0.0 HOH
2.735
O
O
ARG B:34 B:40 242.0 1.0 T -87.9 1.1 NA NA NA
6ew7 1 P41182 97.54 5e-78 X-RAY
2018-10-24 ARG A:34 A:40 242.0 1.0 T -81.9 -4.6 242.0 1.0 0.0 HOH
2.735
O
O
ARG B:34 B:40 251.0 1.0 T -86.1 -3.6 251.0 1.0 0.0 HOH
2.738
O
O
4cp3 1 P41182 97.54 5e-78 X-RAY
2014-03-19 ARG A:36 A:40 212.0 0.942 T -130.9 5.9 212.0 0.942 0.0 HOH
4.924
N
O
ARG B:36 B:40 228.0 1.0 T -114.3 49.5 228.0 1.0 0.0 HOH
5.796
N
O
6ew6 1 P41182 96.75 2e-77 X-RAY
2018-10-24 ARG A:35 A:40 233.0 1.0 T -88.7 -3.1 233.0 1.0 0.0 HOH
2.856
O
O
5n1x 1 P41182 97.5 2e-76 X-RAY
2017-05-17 ARG A:33 A:40 238.0 1.0 T 73.1 -14.0 238.0 1.0 0.0 HOH
2.621
O
O
5n1x 2 P41182 96.69 5e-76 X-RAY
2017-05-17 ARG B:34 B:40 215.0 0.956 T -140.8 4.4 NA NA NA
ARG C:34 C:40 232.0 1.0 T 74.5 -14.8 NA NA NA
5n1x 3 P41182 97.44 2e-74 X-RAY
2017-05-17 ARG D:33 D:40 241.0 1.0 T 73.8 -13.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p41182-f1 1 P41182 100.0 0.0 ARG A:40 A:40 154.0 0.684 H -54.7 -30.2