Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 39130744 . G A CCDS33738.1:NM_020839.2:c.1603Ggt>Agt_NP_065890.1:p.535G>S Homo sapiens WD repeat domain 48 (WDR48), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5k1a 2 Q8TAF3 100.0 0.0 X-RAY
 2016-07-20 GLY B:535 B:535 25.0 0.333 S -53.4 155.8 25.0 0.333 0.0 HOH
 3.947
 N
 O
GLY D:535 D:535 26.0 0.347 S -68.0 151.6 NA NA NA
GLY F:535 F:535 28.0 0.373 S -64.4 153.5 NA NA NA
GLY H:535 H:535 26.0 0.347 S -72.2 151.1 NA NA NA
5k1b 1 Q8TAF3 100.0 0.0 X-RAY
 2016-07-20 GLY A:535 B:535 29.0 0.387 S -65.4 131.6 29.0 0.387 0.0
7ay1 5 Q8TAF3 100.0 0.0 EM
 2021-03-24 GLY E:552 E:535 26.0 0.347 S -54.0 155.5 26.0 0.347 0.0
6jlq 2 Q8TAF3 100.0 0.0 X-RAY
 2019-07-10 GLY B:575 B:535 23.0 0.307 S -60.6 151.3 23.0 0.307 0.0
5cvl 1 Q8TAF3 100.0 0.0 X-RAY
 2015-10-07 GLY A:550 A:535 32.0 0.427 S -42.3 138.6 32.0 0.427 0.0 HOH
 3.800
 N
 O
5cvn 1 Q8TAF3 100.0 0.0 X-RAY
 2015-10-07 GLY A:550 A:535 27.0 0.36 S -66.4 144.2 27.0 0.36 0.0
5l8e 1 Q8TAF3 99.48 0.0 X-RAY
 2016-09-28 GLY A:535 A:535 26.0 0.347 S -62.7 152.3 26.0 0.347 0.0 HOH
 3.898
 C
 O
GLY B:535 B:535 27.0 0.36 S -60.6 153.5 NA NA NA
5l8w 2 Q8TAF3 99.48 0.0 X-RAY
 2016-09-28 GLY B:535 B:535 27.0 0.36 S -66.9 159.1 27.0 0.36 0.0
5k1c 2 Q8TAF3 100.0 0.0 X-RAY
 2016-07-20 GLY B:535 B:535 27.0 0.36 S -60.6 151.4 27.0 0.36 0.0
7ay0 1 Q8TAF3 100.0 0.0 X-RAY
 2021-03-24 GLY A:535 A:535 27.0 0.36 S -53.6 156.2 27.0 0.36 0.0
GLY C:535 C:535 26.0 0.347 S -53.2 157.0 NA NA NA
7ay2 1 Q8TAF3 100.0 0.0 X-RAY
 2021-03-24 GLY A:535 A:535 26.0 0.347 S -54.2 156.0 26.0 0.347 0.0
GLY D:535 D:535 27.0 0.36 S -67.0 152.4 NA NA NA
5cvo 1 Q8TAF3 100.0 0.0 X-RAY
 2015-10-07 GLY A:535 A:535 28.0 0.373 S -41.7 139.0 28.0 0.373 0.0
GLY D:535 D:535 27.0 0.36 S -41.6 139.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8taf3-f1 1 Q8TAF3 100.0 0.0 GLY A:535 A:535 26.0 0.347 S -65.5 147.2