Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 39130759 . A C CCDS33738.1:NM_020839.2:c.1618Atg>Ctg_NP_065890.1:p.540M>L Homo sapiens WD repeat domain 48 (WDR48), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5k1a 2 Q8TAF3 100.0 0.0 X-RAY
 2016-07-20 MET B:540 B:540 106.0 0.573 H -64.3 -48.9 106.0 0.573 0.0 HOH
 8.536
 CE
 O
MET D:540 D:540 76.0 0.411 H -59.5 -47.7 NA NA NA
MET F:540 F:540 122.0 0.659 H -60.7 -45.9 NA NA NA
MET H:540 H:540 114.0 0.616 H -62.2 -46.9 NA NA NA
5k1b 1 Q8TAF3 100.0 0.0 X-RAY
 2016-07-20 MET A:540 B:540 123.0 0.665 H -63.0 -33.3 123.0 0.665 0.0
7ay1 5 Q8TAF3 100.0 0.0 EM
 2021-03-24 MET E:557 E:540 118.0 0.638 H -64.1 -48.0 25.0 0.135 0.503 A:Q9NVI1:0.503
6jlq 2 Q8TAF3 100.0 0.0 X-RAY
 2019-07-10 MET B:580 B:540 114.0 0.616 H -65.1 -34.1 114.0 0.616 0.0
5cvl 1 Q8TAF3 100.0 0.0 X-RAY
 2015-10-07 MET A:555 A:540 107.0 0.578 H -66.4 -36.6 107.0 0.578 0.0
5cvn 1 Q8TAF3 100.0 0.0 X-RAY
 2015-10-07 MET A:555 A:540 124.0 0.67 H -63.8 -47.6 124.0 0.67 0.0
5l8e 1 Q8TAF3 99.48 0.0 X-RAY
 2016-09-28 MET A:540 A:540 103.0 0.557 H -61.6 -43.2 103.0 0.557 0.0 GOL
HOH
 8.889
3.487
 SD
N
 C3
O
MET B:540 B:540 92.0 0.497 H -58.9 -51.7 NA NA NA
5l8w 2 Q8TAF3 99.48 0.0 X-RAY
 2016-09-28 MET B:540 B:540 122.0 0.659 H -62.7 -44.4 122.0 0.659 0.0
5k1c 2 Q8TAF3 100.0 0.0 X-RAY
 2016-07-20 MET B:540 B:540 103.0 0.557 H -67.7 -39.1 103.0 0.557 0.0
7ay0 1 Q8TAF3 100.0 0.0 X-RAY
 2021-03-24 MET A:540 A:540 103.0 0.557 H -64.4 -48.2 103.0 0.557 0.0
MET C:540 C:540 101.0 0.546 H -64.5 -48.4 NA NA NA
7ay2 1 Q8TAF3 100.0 0.0 X-RAY
 2021-03-24 MET A:540 A:540 109.0 0.589 H -64.7 -48.1 109.0 0.589 0.0
MET D:540 D:540 101.0 0.546 H -60.0 -47.5 NA NA NA
5cvo 1 Q8TAF3 100.0 0.0 X-RAY
 2015-10-07 MET A:540 A:540 104.0 0.562 H -66.3 -36.2 104.0 0.562 0.0
MET D:540 D:540 102.0 0.551 H -66.5 -36.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8taf3-f1 1 Q8TAF3 100.0 0.0 MET A:540 A:540 103.0 0.557 H -59.5 -47.4