Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 39130768 . A C CCDS33738.1:NM_020839.2:c.1627Aat>Cat_NP_065890.1:p.543N>H Homo sapiens WD repeat domain 48 (WDR48), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5k1a 2 Q8TAF3 100.0 0.0 X-RAY
 2016-07-20 ASN B:543 B:543 82.0 0.512 H -49.6 -33.7 82.0 0.512 0.0 HOH
 6.773
 O
 O
ASN D:543 D:543 82.0 0.512 H -57.6 -37.4 NA NA NA
ASN F:543 F:543 74.0 0.463 H -56.2 -40.8 NA NA NA
ASN H:543 H:543 78.0 0.487 H -61.1 -34.9 NA NA NA
5k1b 1 Q8TAF3 100.0 0.0 X-RAY
 2016-07-20 ASN A:543 B:543 93.0 0.581 H -51.5 -24.8 93.0 0.581 0.0
7ay1 5 Q8TAF3 100.0 0.0 EM
 2021-03-24 ASN E:560 E:543 80.0 0.5 H -50.2 -33.9 44.0 0.275 0.225 A:Q9NVI1:0.225
6jlq 2 Q8TAF3 100.0 0.0 X-RAY
 2019-07-10 ASN B:583 B:543 87.0 0.544 H -77.3 -28.8 87.0 0.544 0.0
5cvl 1 Q8TAF3 100.0 0.0 X-RAY
 2015-10-07 ASN A:558 A:543 62.0 0.388 H -55.3 -35.0 62.0 0.388 0.0 HOH
 8.535
 O
 O
5cvn 1 Q8TAF3 100.0 0.0 X-RAY
 2015-10-07 ASN A:558 A:543 63.0 0.394 H -60.1 -27.5 63.0 0.394 0.0
5l8e 1 Q8TAF3 99.48 0.0 X-RAY
 2016-09-28 ASN A:543 A:543 81.0 0.506 H -54.2 -41.8 81.0 0.506 0.0 HOH
 3.240
 ND2
 O
ASN B:543 B:543 81.0 0.506 H -58.5 -40.5 NA NA NA
5l8w 2 Q8TAF3 99.48 0.0 X-RAY
 2016-09-28 ASN B:543 B:543 74.0 0.463 H -59.3 -39.0 74.0 0.463 0.0
5k1c 2 Q8TAF3 100.0 0.0 X-RAY
 2016-07-20 ASN B:543 B:543 83.0 0.519 H -61.6 -49.8 83.0 0.519 0.0
7ay0 1 Q8TAF3 100.0 0.0 X-RAY
 2021-03-24 ASN A:543 A:543 77.0 0.481 H -49.5 -33.2 77.0 0.481 0.0
ASN C:543 C:543 77.0 0.481 H -49.3 -33.3 NA NA NA
7ay2 1 Q8TAF3 100.0 0.0 X-RAY
 2021-03-24 ASN A:543 A:543 81.0 0.506 H -49.7 -33.9 81.0 0.506 0.0
ASN D:543 D:543 82.0 0.512 H -57.3 -37.2 NA NA NA
5cvo 1 Q8TAF3 100.0 0.0 X-RAY
 2015-10-07 ASN A:543 A:543 62.0 0.388 H -56.6 -35.1 62.0 0.388 0.0
ASN D:543 D:543 62.0 0.388 H -56.6 -35.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8taf3-f1 1 Q8TAF3 100.0 0.0 ASN A:543 A:543 72.0 0.45 H -58.9 -31.4