Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 10183815 . C A CCDS2597.1:NM_000551.3:c.284cCg>cAg_NP_000542.1:p.95P>Q Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4wqo 1 P40337 100.0 4e-156 X-RAY
2015-03-04 PRO A:115 A:95 40.0 0.276 E -72.6 129.1 40.0 0.276 0.0
7q2j 3 P40337 94.25 1e-118 X-RAY
2021-11-24 PRO C:79 C:95 59.0 0.407 E -62.9 122.4 59.0 0.407 0.0
4b9k 3 P40337 95.32 3e-118 X-RAY
2012-10-24 PRO C:53 C:95 49.0 0.338 E -73.6 129.5 49.0 0.338 0.0 HOH
4.011
CD
O
PRO F:53 F:95 51.0 0.352 E -73.9 128.9 NA NA NA
PRO I:53 I:95 29.0 0.2 E -73.8 129.1 NA NA NA
PRO L:53 L:95 36.0 0.248 E -73.3 130.8 NA NA NA
1lqb 3 P40337 99.38 4e-117 X-RAY
2002-07-03 PRO C:44 C:95 43.0 0.297 E -67.7 121.7 43.0 0.297 0.0 HOH
9.345
CB
O
3ztd 3 P40337 99.38 4e-117 X-RAY
2012-07-25 PRO C:44 C:95 40.0 0.276 E -60.5 138.1 40.0 0.276 0.0
PRO F:44 F:95 34.0 0.234 E -51.5 131.7 NA NA NA
PRO I:44 I:95 32.0 0.221 E -43.1 132.0 NA NA NA
PRO L:44 L:95 38.0 0.262 E -59.4 139.4 NA NA NA
4b95 3 P40337 99.38 4e-117 X-RAY
2012-10-24 PRO C:44 C:95 50.0 0.345 E -75.4 126.2 50.0 0.345 0.0 HOH
5.247
CD
O
PRO F:44 F:95 50.0 0.345 E -75.7 122.1 NA NA NA
PRO I:44 I:95 45.0 0.31 E -73.9 127.3 NA NA NA
PRO L:44 L:95 41.0 0.283 E -73.7 126.0 NA NA NA
4bks 3 P40337 99.38 4e-117 X-RAY
2013-11-27 PRO C:44 C:95 62.0 0.428 E -67.5 127.9 62.0 0.428 0.0 HOH
4.221
CB
O
PRO F:44 F:95 61.0 0.421 E -66.9 129.2 NA NA NA
PRO I:44 I:95 39.0 0.269 E -66.6 131.1 NA NA NA
PRO L:44 L:95 42.0 0.29 E -66.8 131.1 NA NA NA
4bkt 3 P40337 99.38 4e-117 X-RAY
2013-11-27 PRO C:44 C:95 49.0 0.338 E -67.7 123.8 49.0 0.338 0.0 HOH
3.765
CD
O
PRO F:44 F:95 35.0 0.241 E -66.3 123.3 NA NA NA
PRO I:44 I:95 43.0 0.297 E -68.6 126.7 NA NA NA
PRO L:44 L:95 45.0 0.31 E -68.0 124.8 NA NA NA
4w9c 3 P40337 99.38 4e-117 X-RAY
2014-09-10 PRO C:44 C:95 43.0 0.297 E -69.7 127.1 43.0 0.297 0.0 HOH
4.309
CD
O
PRO F:44 F:95 39.0 0.269 E -62.6 130.4 NA NA NA
PRO I:44 I:95 41.0 0.283 E -65.6 133.6 NA NA NA
PRO L:44 L:95 38.0 0.262 E -68.5 130.2 NA NA NA
4w9d 3 P40337 99.38 4e-117 X-RAY
2014-09-10 PRO C:44 C:95 40.0 0.276 E -73.4 132.3 40.0 0.276 0.0 HOH
4.312
CD
O
PRO F:44 F:95 39.0 0.269 E -64.3 129.9 NA NA NA
PRO I:44 I:95 38.0 0.262 E -68.9 136.4 NA NA NA
PRO L:44 L:95 36.0 0.248 E -67.3 137.5 NA NA NA
4w9e 3 P40337 99.38 4e-117 X-RAY
2014-09-10 PRO C:44 C:95 44.0 0.303 E -75.0 123.0 44.0 0.303 0.0 HOH
4.569
CD
O
PRO F:44 F:95 40.0 0.276 E -72.1 124.9 NA NA NA
PRO I:44 I:95 39.0 0.269 E -73.3 142.1 NA NA NA
PRO L:44 L:95 39.0 0.269 E -78.4 127.4 NA NA NA
4w9f 3 P40337 99.38 4e-117 X-RAY
2014-09-10 PRO C:44 C:95 53.0 0.366 E -71.9 125.0 53.0 0.366 0.0 HOH
4.038
CD
O
PRO F:44 F:95 37.0 0.255 E -69.1 129.4 NA NA NA
PRO I:44 I:95 37.0 0.255 E -68.1 133.9 NA NA NA
PRO L:44 L:95 38.0 0.262 E -69.4 129.2 NA NA NA
4w9g 3 P40337 99.38 4e-117 X-RAY
2014-09-10 PRO C:44 C:95 40.0 0.276 E -75.5 124.5 40.0 0.276 0.0 HOH
4.791
CD
O
PRO F:44 F:95 38.0 0.262 E -68.1 130.5 NA NA NA
PRO I:44 I:95 39.0 0.269 E -69.9 140.3 NA NA NA
PRO L:44 L:95 36.0 0.248 E -72.1 131.4 NA NA NA
4w9h 3 P40337 99.38 4e-117 X-RAY
2014-09-10 PRO C:44 C:95 43.0 0.297 E -73.4 125.7 43.0 0.297 0.0 HOH
4.202
CD
O
PRO F:44 F:95 39.0 0.269 E -66.8 129.0 NA NA NA
PRO I:44 I:95 38.0 0.262 E -68.6 134.0 NA NA NA
PRO L:44 L:95 30.0 0.207 E -70.1 132.6 NA NA NA
4w9i 3 P40337 99.38 4e-117 X-RAY
2014-09-10 PRO C:44 C:95 41.0 0.283 E -75.2 126.4 41.0 0.283 0.0 HOH
4.323
CD
O
PRO F:44 F:95 37.0 0.255 E -70.3 127.9 NA NA NA
PRO I:44 I:95 36.0 0.248 E -69.9 132.2 NA NA NA
PRO L:44 L:95 32.0 0.221 E -72.0 132.5 NA NA NA
4w9j 3 P40337 99.38 4e-117 X-RAY
2014-09-10 PRO C:44 C:95 39.0 0.269 E -71.0 121.5 39.0 0.269 0.0 HOH
4.208
CD
O
PRO F:44 F:95 39.0 0.269 E -67.0 128.3 NA NA NA
PRO I:44 I:95 37.0 0.255 E -69.4 125.8 NA NA NA
PRO L:44 L:95 36.0 0.248 E -68.5 126.7 NA NA NA
4w9k 3 P40337 99.38 4e-117 X-RAY
2014-09-10 PRO C:44 C:95 35.0 0.241 E -65.6 132.4 35.0 0.241 0.0 HOH
4.956
CD
O
PRO F:44 F:95 33.0 0.228 E -68.3 132.6 NA NA NA
PRO I:44 I:95 38.0 0.262 E -70.2 134.6 NA NA NA
PRO L:44 L:95 34.0 0.234 E -67.6 128.1 NA NA NA
4w9l 3 P40337 99.38 4e-117 X-RAY
2014-09-10 PRO C:44 C:95 40.0 0.276 E -68.7 127.5 40.0 0.276 0.0 HOH
8.559
C
O
PRO F:44 F:95 40.0 0.276 E -66.2 130.6 NA NA NA
PRO I:44 I:95 37.0 0.255 E -68.2 128.6 NA NA NA
PRO L:44 L:95 39.0 0.269 E -69.8 127.2 NA NA NA
5lli 3 P40337 99.38 4e-117 X-RAY
2016-11-09 PRO C:44 C:95 42.0 0.29 E -74.1 127.3 42.0 0.29 0.0 HOH
5.145
O
O
PRO F:44 F:95 42.0 0.29 E -69.8 126.6 NA NA NA
PRO I:44 I:95 41.0 0.283 E -70.5 134.5 NA NA NA
PRO L:44 L:95 40.0 0.276 E -68.2 131.4 NA NA NA
5nvv 3 P40337 99.38 4e-117 X-RAY
2017-09-20 PRO C:44 C:95 37.0 0.255 E -71.6 123.2 37.0 0.255 0.0 HOH
3.881
CD
O
PRO F:44 F:95 36.0 0.248 E -68.1 126.1 NA NA NA
PRO I:44 I:95 37.0 0.255 E -68.0 135.0 NA NA NA
PRO L:44 L:95 36.0 0.248 E -66.5 131.7 NA NA NA
5nvw 3 P40337 99.38 4e-117 X-RAY
2017-09-20 PRO C:44 C:95 38.0 0.262 E -70.9 123.2 38.0 0.262 0.0 HOH
5.468
C
O
PRO F:44 F:95 40.0 0.276 E -64.8 127.5 NA NA NA
PRO I:44 I:95 37.0 0.255 E -70.5 136.0 NA NA NA
PRO L:44 L:95 37.0 0.255 E -65.2 132.9 NA NA NA
5nvx 3 P40337 99.38 4e-117 X-RAY
2017-09-20 PRO C:44 C:95 37.0 0.255 E -72.2 124.6 37.0 0.255 0.0 HOH
4.763
CD
O
PRO F:44 F:95 37.0 0.255 E -65.0 123.6 NA NA NA
PRO I:44 I:95 36.0 0.248 E -72.2 133.6 NA NA NA
PRO L:44 L:95 37.0 0.255 E -70.4 132.2 NA NA NA
5nvy 3 P40337 99.38 4e-117 X-RAY
2017-09-20 PRO C:44 C:95 44.0 0.303 E -75.5 118.3 44.0 0.303 0.0 HOH
4.111
CD
O
PRO F:44 F:95 43.0 0.297 E -69.6 121.7 NA NA NA
PRO I:44 I:95 34.0 0.234 E -66.8 141.0 NA NA NA
PRO L:44 L:95 33.0 0.228 E -77.1 124.8 NA NA NA
5nvz 3 P40337 99.38 4e-117 X-RAY
2017-09-20 PRO C:44 C:95 39.0 0.269 E -75.2 125.1 39.0 0.269 0.0 HOH
4.943
C
O
PRO F:44 F:95 39.0 0.269 E -64.1 135.1 NA NA NA
PRO I:44 I:95 39.0 0.269 E -67.6 141.6 NA NA NA
PRO L:44 L:95 37.0 0.255 E -72.5 137.1 NA NA NA
5nw0 3 P40337 99.38 4e-117 X-RAY
2017-09-20 PRO C:44 C:95 39.0 0.269 E -71.2 131.2 39.0 0.269 0.0 HOH
4.423
CD
O
PRO F:44 F:95 38.0 0.262 E -68.4 129.7 NA NA NA
PRO I:44 I:95 38.0 0.262 E -70.5 135.9 NA NA NA
PRO L:44 L:95 39.0 0.269 E -68.6 128.5 NA NA NA
5nw1 3 P40337 99.38 4e-117 X-RAY
2017-09-20 PRO C:44 C:95 38.0 0.262 E -71.4 126.6 38.0 0.262 0.0 HOH
3.930
CG
O
PRO F:44 F:95 38.0 0.262 E -68.8 128.8 NA NA NA
PRO I:44 I:95 39.0 0.269 E -66.4 135.0 NA NA NA
PRO L:44 L:95 40.0 0.276 E -71.4 129.2 NA NA NA
5nw2 3 P40337 99.38 4e-117 X-RAY
2017-09-20 PRO C:44 C:95 42.0 0.29 E -70.6 124.7 42.0 0.29 0.0 HOH
4.131
CD
O
PRO F:44 F:95 39.0 0.269 E -71.4 125.1 NA NA NA
PRO I:44 I:95 41.0 0.283 E -70.6 135.3 NA NA NA
PRO L:44 L:95 38.0 0.262 E -66.8 129.8 NA NA NA
5t35 4 P40337 99.38 4e-117 X-RAY
2017-03-08 PRO D:44 D:95 38.0 0.262 E -73.4 132.4 38.0 0.262 0.0 HOH
5.911
CG
O
PRO H:44 H:95 40.0 0.276 E -72.7 132.2 NA NA NA
6bvb 1 P40337 99.38 4e-117 X-RAY
2018-08-01 PRO A:44 V:95 55.0 0.379 E -74.7 137.0 55.0 0.379 0.0 HOH
8.795
HG3
O
6gfy 3 P40337 99.38 4e-117 X-RAY
2018-07-11 PRO C:44 C:95 43.0 0.297 E -74.9 130.4 43.0 0.297 0.0 HOH
4.581
CD
O
PRO F:44 F:95 37.0 0.255 E -68.2 128.9 NA NA NA
PRO I:44 I:95 35.0 0.241 E -64.5 142.3 NA NA NA
PRO L:44 L:95 39.0 0.269 E -74.9 133.7 NA NA NA
6gfz 3 P40337 99.38 4e-117 X-RAY
2018-07-11 PRO C:44 C:95 39.0 0.269 E -72.5 130.1 39.0 0.269 0.0 HOH
5.096
O
O
PRO F:44 F:95 38.0 0.262 E -68.1 122.2 NA NA NA
PRO I:44 I:95 35.0 0.241 E -71.6 134.9 NA NA NA
PRO L:44 L:95 35.0 0.241 E -68.2 132.7 NA NA NA
6gmn 3 P40337 99.38 4e-117 X-RAY
2018-08-08 PRO C:44 C:95 46.0 0.317 E -70.1 131.3 46.0 0.317 0.0 HOH
4.717
CD
O
PRO F:44 F:95 39.0 0.269 E -69.7 130.5 NA NA NA
PRO L:44 L:95 38.0 0.262 E -70.6 132.6 NA NA NA
6gmn 5 P40337 99.38 4e-117 X-RAY
2018-08-08 PRO I:44 I:95 40.0 0.276 E -70.2 132.7 NA NA NA
6gmq 3 P40337 99.38 4e-117 X-RAY
2018-08-22 PRO C:44 C:95 49.0 0.338 E -76.1 130.8 49.0 0.338 0.0 HOH
4.884
CD
O
PRO F:44 F:95 44.0 0.303 E -75.1 133.4 NA NA NA
PRO I:44 I:95 49.0 0.338 E -74.8 135.2 NA NA NA
PRO L:44 L:95 38.0 0.262 E -72.5 132.4 NA NA NA
6gmx 3 P40337 99.38 4e-117 X-RAY
2018-08-08 PRO C:44 C:95 45.0 0.31 E -71.0 133.7 45.0 0.31 0.0 HOH
5.359
CD
O
PRO F:44 F:95 32.0 0.221 E -68.3 133.1 NA NA NA
PRO I:44 I:95 39.0 0.269 E -71.4 136.5 NA NA NA
PRO L:44 L:95 30.0 0.207 E -71.5 134.6 NA NA NA
6hax 2 P40337 99.38 4e-117 X-RAY
2019-06-12 PRO B:44 B:95 31.0 0.214 E -76.4 128.0 31.0 0.214 0.0 EDO
HOH
9.001
6.115
O
CD
O1
O
PRO F:44 F:95 33.0 0.228 E -76.1 128.4 NA NA NA
6hay 2 P40337 99.38 4e-117 X-RAY
2019-06-12 PRO B:44 B:95 36.0 0.248 E -72.6 134.4 36.0 0.248 0.0 HOH
4.137
CB
O
PRO F:44 F:95 33.0 0.228 E -72.8 133.9 NA NA NA
6sis 4 P40337 99.38 4e-117 X-RAY
2019-12-04 PRO D:44 D:95 34.0 0.234 E -74.3 133.6 34.0 0.234 0.0 LFE
9.738
C
C32
PRO H:44 H:95 34.0 0.234 E -74.1 133.5 NA NA NA
7jto 4 P40337 99.38 4e-117 X-RAY
2021-10-06 PRO D:44 L:95 31.0 0.214 E -72.4 135.9 31.0 0.214 0.0 HOH
3.511
CG
O
7jtp 3 P40337 99.38 4e-117 X-RAY
2021-10-06 PRO C:44 L:95 35.0 0.241 E -69.9 132.5 35.0 0.241 0.0 HOH
5.267
O
O
3zrc 3 P40337 98.77 4e-117 X-RAY
2012-03-07 PRO C:45 C:95 49.0 0.338 E -61.8 120.8 49.0 0.338 0.0
PRO F:45 F:95 39.0 0.269 E -75.7 128.8 NA NA NA
PRO I:45 I:95 26.0 0.179 E -66.0 133.9 NA NA NA
PRO L:45 L:95 46.0 0.317 E -56.9 135.2 NA NA NA
3zrf 3 P40337 98.77 4e-117 X-RAY
2012-03-07 PRO C:45 C:95 52.0 0.359 E -84.7 125.4 52.0 0.359 0.0
PRO F:45 F:95 35.0 0.241 E -69.9 130.9 NA NA NA
PRO I:45 I:95 30.0 0.207 E -71.3 136.7 NA NA NA
PRO L:45 L:95 41.0 0.283 E -59.0 131.5 NA NA NA
3ztc 3 P40337 98.77 4e-117 X-RAY
2012-07-25 PRO C:45 C:95 40.0 0.276 E -57.1 123.4 40.0 0.276 0.0
PRO F:45 F:95 34.0 0.234 E -65.3 136.8 NA NA NA
PRO I:45 I:95 32.0 0.221 E -58.0 143.4 NA NA NA
PRO L:45 L:95 40.0 0.276 E -72.8 134.1 NA NA NA
3zun 3 P40337 98.77 4e-117 X-RAY
2012-07-25 PRO C:45 C:95 49.0 0.338 E -66.4 122.9 49.0 0.338 0.0 HOH
4.480
CD
O
PRO F:45 F:95 50.0 0.345 E -67.9 135.3 NA NA NA
PRO I:45 I:95 41.0 0.283 E -58.2 132.2 NA NA NA
PRO L:45 L:95 45.0 0.31 E -62.2 123.4 NA NA NA
4ajy 4 P40337 98.77 4e-117 X-RAY
2012-11-14 PRO D:45 V:95 32.0 0.221 E -78.7 134.4 32.0 0.221 0.0 HOH
5.666
CD
O
4awj 3 P40337 98.77 4e-117 X-RAY
2012-11-14 PRO C:45 C:95 49.0 0.338 E -66.0 120.4 49.0 0.338 0.0 HOH
4.536
CD
O
PRO F:45 F:95 46.0 0.317 E -63.1 125.7 NA NA NA
PRO I:45 I:95 34.0 0.234 E -62.5 136.7 NA NA NA
PRO L:45 L:95 35.0 0.241 E -65.1 118.3 NA NA NA
6gmr 4 P40337 98.77 4e-117 X-RAY
2018-08-08 PRO D:45 V:95 40.0 0.276 E -72.8 135.4 40.0 0.276 0.0 F4K
HOH
9.628
2.726
CB
O
C11
O
1lm8 3 P40337 100.0 6e-117 X-RAY
2002-06-12 PRO C:42 V:95 33.0 0.228 E -73.0 128.1 33.0 0.228 0.0 HOH
2.819
O
O
1vcb 3 P40337 100.0 6e-117 X-RAY
1999-04-21 PRO C:42 C:95 33.0 0.228 E -64.3 125.5 33.0 0.228 0.0 HOH
5.079
CD
O
PRO F:42 F:95 35.0 0.241 E -64.1 126.0 NA NA NA
PRO I:42 I:95 36.0 0.248 E -65.2 124.9 NA NA NA
PRO L:42 L:95 35.0 0.241 E -65.1 125.7 NA NA NA
5n4w 2 P40337 100.0 6e-117 X-RAY
2017-06-07 PRO B:42 NA:NA DO NA DO DO DO NA NA NA
6gfx 3 P40337 100.0 6e-117 X-RAY
2018-07-11 PRO C:42 C:95 33.0 0.228 E -74.0 131.3 33.0 0.228 0.0 HOH
3.798
CD
O
6i7q 4 P40337 100.0 6e-117 X-RAY
2019-11-27 PRO D:42 V:95 49.0 0.338 E -77.5 139.1 49.0 0.338 0.0 HOH
4.693
HG3
O
6i7r 4 P40337 100.0 6e-117 X-RAY
2019-11-27 PRO D:42 V:95 62.0 0.428 E -79.3 135.3 62.0 0.428 0.0 HOH
4.499
HG3
O
6r7f 9 P40337 100.0 6e-117 EM
2019-08-28 PRO I:42 V:95 38.0 0.262 E -72.1 137.9 38.0 0.262 0.0
7khh 3 P40337 100.0 6e-116 X-RAY
2021-02-24 PRO C:57 C:95 27.0 0.186 E -76.0 126.2 27.0 0.186 0.0 WEP
HOH
9.572
3.974
C
O
O47
O
7cjb 1 P40337 100.0 8e-116 X-RAY
2021-07-14 PRO A:45 A:95 38.0 0.262 E -67.8 131.7 38.0 0.262 0.0
PRO E:45 E:95 37.0 0.255 E -67.4 131.4 NA NA NA
PRO I:45 I:95 35.0 0.241 E -68.1 131.1 NA NA NA
PRO M:45 M:95 34.0 0.234 E -68.4 131.5 NA NA NA
6zhc 1 P40337 100.0 4e-113 X-RAY
2020-08-05 PRO A:37 AAA:95 54.0 0.372 E -72.8 129.3 54.0 0.372 0.0 EDO
IOD
HOH
3.652
7.220
4.529
CD
CB
O
O2
I
O
7pi4 1 P40337 100.0 4e-113 X-RAY
2021-09-29 PRO A:37 AAA:95 30.0 0.207 E -75.3 131.2 30.0 0.207 0.0 EDO
EDO
HOH
7.290
6.715
6.105
C
C
CD
O1
C1
O
6fmi 3 P40337 99.34 1e-109 X-RAY
2018-04-11 PRO C:44 C:95 32.0 0.221 E -76.4 120.1 32.0 0.221 0.0 HOH
9.593
CD
O
PRO F:44 F:95 32.0 0.221 E -77.2 121.7 NA NA NA
6fmj 3 P40337 99.34 1e-109 X-RAY
2018-04-11 PRO C:44 C:95 46.0 0.317 E -74.2 126.3 46.0 0.317 0.0 HOH
4.020
CD
O
PRO F:44 F:95 39.0 0.269 E -70.8 126.1 NA NA NA
PRO I:44 I:95 37.0 0.255 E -73.8 134.7 NA NA NA
PRO L:44 L:95 38.0 0.262 E -73.6 127.3 NA NA NA
6fmk 3 P40337 99.34 1e-109 X-RAY
2018-04-11 PRO C:44 C:95 41.0 0.283 E -76.0 126.1 41.0 0.283 0.0 HOH
5.038
CD
O
PRO F:44 F:95 41.0 0.283 E -71.6 134.8 NA NA NA
PRO I:44 I:95 35.0 0.241 E -72.4 134.4 NA NA NA
PRO L:44 L:95 37.0 0.255 E -76.5 132.3 NA NA NA
6hr2 2 P40337 100.0 3e-108 X-RAY
2019-06-12 PRO B:35 B:95 34.0 0.234 E -70.5 134.1 34.0 0.234 0.0 FWZ
HOH
9.250
3.805
HA
HD3
H20
O
PRO F:35 F:95 33.0 0.228 E -70.6 134.5 NA NA NA
6r6h 12 P40337 100.0 3e-107 EM
2019-08-28 PRO L:36 V:95 58.0 0.4 E -71.0 134.7 58.0 0.4 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p40337-f1 1 P40337 100.0 2e-156 PRO A:95 A:95 48.0 0.331 E -74.5 123.4