Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 10188290 . C A CCDS2597.1:NM_000551.3:c.433Cag>Aag_NP_000542.1:p.145Q>K Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4wqo 1 P40337 100.0 4e-156 X-RAY
2015-03-04 GLN A:165 A:145 57.0 NA B -89.5 124.5 57.0 NA NA
7q2j 3 P40337 94.25 1e-118 X-RAY
2021-11-24 GLN C:129 C:145 117.0 0.65 B -87.5 122.5 117.0 0.65 0.0
4b9k 3 P40337 95.32 3e-118 X-RAY
2012-10-24 GLN C:103 C:145 197.0 1.0 360.0 128.2 197.0 1.0 0.0 HOH
2.841
O
O
GLN F:103 F:145 51.0 NA -73.5 126.7 NA NA NA
GLN I:103 I:145 138.0 0.767 -86.7 121.1 NA NA NA
GLN L:103 L:145 129.0 0.717 -91.3 135.8 NA NA NA
1lqb 3 P40337 99.38 4e-117 X-RAY
2002-07-03 GLN C:94 C:145 124.0 0.689 -79.2 112.5 124.0 0.689 0.0 HOH
6.816
O
O
3ztd 3 P40337 99.38 4e-117 X-RAY
2012-07-25 GLN C:94 C:145 85.0 NA S 54.1 -168.8 85.0 NA NA
GLN F:94 F:145 111.0 0.617 49.1 -116.6 NA NA NA
GLN I:94 I:145 53.0 NA -109.3 129.0 NA NA NA
GLN L:94 L:145 97.0 0.539 41.3 -127.8 NA NA NA
4b95 3 P40337 99.38 4e-117 X-RAY
2012-10-24 GLN C:94 NA:NA DO NA DO DO DO NA NA NA
GLN F:94 F:145 66.0 NA -29.6 118.1 NA NA NA
GLN I:94 I:145 137.0 0.761 -143.4 116.3 NA NA NA
GLN L:94 NA:NA DO NA DO DO DO NA NA NA
4bks 3 P40337 99.38 4e-117 X-RAY
2013-11-27 GLN C:94 C:145 105.0 NA 360.0 -67.0 105.0 NA NA HOH
2.874
O
O
GLN F:94 F:145 53.0 NA -66.1 136.1 NA NA NA
GLN I:94 I:145 128.0 0.711 -79.0 120.7 NA NA NA
GLN L:94 L:145 129.0 0.717 -89.8 135.8 NA NA NA
4bkt 3 P40337 99.38 4e-117 X-RAY
2013-11-27 GLN C:94 C:145 99.0 NA 360.0 -73.2 99.0 NA NA HOH
2.988
O
O
GLN F:94 F:145 51.0 NA -76.9 135.4 NA NA NA
GLN I:94 I:145 137.0 0.761 -81.6 116.5 NA NA NA
GLN L:94 L:145 129.0 0.717 -94.4 140.9 NA NA NA
4w9c 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLN C:94 C:145 50.0 NA -80.3 131.2 50.0 NA NA HOH
7.678
O
O
GLN F:94 F:145 49.0 NA -77.7 132.2 NA NA NA
GLN I:94 I:145 136.0 0.756 -75.0 127.9 NA NA NA
GLN L:94 L:145 120.0 0.667 -82.6 130.9 NA NA NA
4w9d 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLN C:94 C:145 51.0 NA -80.3 134.8 51.0 NA NA HOH
7.038
O
O
GLN F:94 F:145 53.0 NA -73.5 126.4 NA NA NA
GLN I:94 I:145 134.0 0.744 -76.2 120.1 NA NA NA
GLN L:94 L:145 126.0 0.7 -77.6 123.1 NA NA NA
4w9e 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLN C:94 C:145 48.0 NA -132.6 131.0 48.0 NA NA
GLN F:94 F:145 51.0 NA -67.4 129.4 NA NA NA
GLN I:94 I:145 136.0 0.756 B -80.9 120.0 NA NA NA
GLN L:94 L:145 119.0 0.661 -111.2 120.2 NA NA NA
4w9f 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLN C:94 C:145 137.0 0.761 -98.6 149.1 137.0 0.761 0.0 HOH
2.984
OE1
O
GLN F:94 F:145 52.0 NA -72.2 129.0 NA NA NA
GLN I:94 I:145 136.0 0.756 -83.9 130.6 NA NA NA
GLN L:94 L:145 138.0 0.767 -79.7 136.0 NA NA NA
4w9g 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLN C:94 C:145 49.0 NA -99.0 131.2 49.0 NA NA
GLN F:94 F:145 52.0 NA -74.6 127.4 NA NA NA
GLN I:94 I:145 139.0 0.772 -85.5 122.7 NA NA NA
GLN L:94 L:145 120.0 0.667 -110.7 123.8 NA NA NA
4w9h 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLN C:94 C:145 51.0 NA -69.9 139.6 51.0 NA NA HOH
5.879
C
O
GLN F:94 F:145 53.0 NA -74.5 131.2 NA NA NA
GLN I:94 I:145 139.0 0.772 -78.7 124.3 NA NA NA
GLN L:94 L:145 124.0 0.689 -58.9 130.8 NA NA NA
4w9i 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLN C:94 C:145 48.0 NA -88.8 140.4 48.0 NA NA HOH
6.713
O
O
GLN F:94 F:145 52.0 NA -78.0 133.7 NA NA NA
GLN I:94 I:145 131.0 0.728 -74.3 127.7 NA NA NA
GLN L:94 L:145 124.0 0.689 -83.9 127.6 NA NA NA
4w9j 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLN C:94 C:145 52.0 NA -77.2 139.6 52.0 NA NA HOH
3.292
O
O
GLN F:94 F:145 50.0 NA -91.9 134.6 NA NA NA
GLN I:94 I:145 125.0 0.694 -79.9 128.9 NA NA NA
GLN L:94 L:145 129.0 0.717 -68.9 127.9 NA NA NA
4w9k 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLN C:94 C:145 52.0 NA -90.4 136.0 52.0 NA NA HOH
6.731
O
O
GLN F:94 F:145 55.0 NA -54.5 124.2 NA NA NA
GLN I:94 I:145 127.0 0.706 -80.1 128.8 NA NA NA
GLN L:94 L:145 125.0 0.694 -72.5 130.3 NA NA NA
4w9l 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLN C:94 C:145 51.0 NA -86.1 135.5 51.0 NA NA HOH
6.780
O
O
GLN F:94 F:145 52.0 NA -80.3 128.3 NA NA NA
GLN I:94 I:145 139.0 0.772 -76.6 125.3 NA NA NA
GLN L:94 L:145 127.0 0.706 -78.6 128.7 NA NA NA
5lli 3 P40337 99.38 4e-117 X-RAY
2016-11-09 GLN C:94 C:145 54.0 NA -72.3 138.1 54.0 NA NA HOH
2.918
O
O
GLN F:94 F:145 54.0 NA -80.4 130.3 NA NA NA
GLN I:94 I:145 128.0 0.711 -82.0 129.6 NA NA NA
GLN L:94 L:145 113.0 0.628 -115.6 121.5 NA NA NA
5nvv 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLN C:94 C:145 47.0 NA -84.1 138.6 47.0 NA NA HOH
2.746
O
O
GLN F:94 F:145 52.0 NA -79.5 131.3 NA NA NA
GLN I:94 I:145 135.0 0.75 -80.0 127.2 NA NA NA
GLN L:94 L:145 116.0 0.644 -103.4 125.1 NA NA NA
5nvw 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLN C:94 C:145 49.0 NA -93.4 140.7 49.0 NA NA HOH
2.923
O
O
GLN F:94 F:145 53.0 NA -74.7 134.5 NA NA NA
GLN I:94 I:145 136.0 0.756 -80.6 127.4 NA NA NA
GLN L:94 L:145 117.0 0.65 -104.2 129.4 NA NA NA
5nvx 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLN C:94 C:145 48.0 NA -78.0 141.9 48.0 NA NA HOH
2.969
O
O
GLN F:94 F:145 54.0 NA -75.4 134.6 NA NA NA
GLN I:94 I:145 140.0 0.778 -76.4 126.2 NA NA NA
GLN L:94 L:145 110.0 0.611 -112.6 123.8 NA NA NA
5nvy 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLN C:94 C:145 127.0 0.706 -108.5 141.4 127.0 0.706 0.0
GLN F:94 F:145 140.0 0.778 -79.5 134.8 NA NA NA
GLN I:94 I:145 136.0 0.756 -87.8 122.8 NA NA NA
GLN L:94 L:145 114.0 0.633 -126.6 121.2 NA NA NA
5nvz 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLN C:94 C:145 51.0 NA -109.9 129.8 51.0 NA NA HOH
2.992
O
O
GLN F:94 F:145 56.0 NA B -83.1 118.1 NA NA NA
GLN I:94 I:145 125.0 0.694 -99.6 118.7 NA NA NA
GLN L:94 L:145 111.0 0.617 -116.9 117.6 NA NA NA
5nw0 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLN C:94 C:145 54.0 NA -79.9 136.1 54.0 NA NA HOH
2.902
O
O
GLN F:94 F:145 54.0 NA -72.0 130.9 NA NA NA
GLN I:94 I:145 131.0 0.728 -89.0 129.4 NA NA NA
GLN L:94 L:145 119.0 0.661 -103.8 125.7 NA NA NA
5nw1 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLN C:94 C:145 51.0 NA -81.6 140.5 51.0 NA NA HOH
2.878
O
O
GLN F:94 F:145 54.0 NA -75.7 134.7 NA NA NA
GLN I:94 I:145 125.0 0.694 -87.7 130.1 NA NA NA
GLN L:94 L:145 112.0 0.622 -119.1 120.5 NA NA NA
5nw2 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLN C:94 C:145 133.0 0.739 -94.4 143.3 133.0 0.739 0.0 HOH
2.953
O
O
GLN F:94 F:145 52.0 NA -75.1 134.4 NA NA NA
GLN I:94 I:145 131.0 0.728 -86.2 130.0 NA NA NA
GLN L:94 L:145 116.0 0.644 -99.8 124.7 NA NA NA
5t35 4 P40337 99.38 4e-117 X-RAY
2017-03-08 GLN D:94 D:145 118.0 0.656 B -83.0 129.6 118.0 0.656 0.0 HOH
2.929
O
O
GLN H:94 H:145 117.0 0.65 B -81.9 131.8 NA NA NA
6bvb 1 P40337 99.38 4e-117 X-RAY
2018-08-01 GLN A:94 V:145 54.0 NA -72.6 121.9 54.0 NA NA HOH
7.046
O
O
6gfy 3 P40337 99.38 4e-117 X-RAY
2018-07-11 GLN C:94 C:145 49.0 NA -98.4 138.3 49.0 NA NA
GLN F:94 F:145 58.0 NA -71.7 127.2 NA NA NA
GLN I:94 I:145 127.0 0.706 -90.5 123.5 NA NA NA
GLN L:94 L:145 112.0 0.622 -115.4 121.2 NA NA NA
6gfz 3 P40337 99.38 4e-117 X-RAY
2018-07-11 GLN C:94 C:145 48.0 NA -90.9 139.2 48.0 NA NA HOH
2.771
O
O
GLN F:94 F:145 50.0 NA -75.9 126.7 NA NA NA
GLN I:94 I:145 134.0 0.744 -82.1 125.2 NA NA NA
GLN L:94 L:145 116.0 0.644 -99.9 119.9 NA NA NA
6gmn 3 P40337 99.38 4e-117 X-RAY
2018-08-08 GLN C:94 NA:NA DO NA DO DO DO NA NA NA
GLN F:94 F:145 139.0 0.772 -75.2 132.3 NA NA NA
GLN L:94 L:145 126.0 0.7 S -129.2 138.0 NA NA NA
6gmn 5 P40337 99.38 4e-117 X-RAY
2018-08-08 GLN I:94 I:145 137.0 0.761 -84.3 129.6 NA NA NA
6gmq 3 P40337 99.38 4e-117 X-RAY
2018-08-22 GLN C:94 NA:NA DO NA DO DO DO NA NA NA
GLN F:94 F:145 119.0 0.661 -89.5 131.1 NA NA NA
GLN I:94 I:145 131.0 0.728 -82.4 125.8 NA NA NA
GLN L:94 L:145 131.0 0.728 B -89.1 130.2 NA NA NA
6gmx 3 P40337 99.38 4e-117 X-RAY
2018-08-08 GLN C:94 C:145 96.0 NA 360.0 -52.0 96.0 NA NA HOH
3.387
O
O
GLN F:94 F:145 130.0 0.722 -55.1 111.4 NA NA NA
GLN I:94 I:145 131.0 0.728 -102.3 124.0 NA NA NA
GLN L:94 L:145 129.0 0.717 -100.4 138.3 NA NA NA
6hax 2 P40337 99.38 4e-117 X-RAY
2019-06-12 GLN B:94 B:145 119.0 0.661 -30.4 109.2 119.0 0.661 0.0 HOH
3.279
O
O
GLN F:94 F:145 127.0 0.706 -31.9 109.8 NA NA NA
6hay 2 P40337 99.38 4e-117 X-RAY
2019-06-12 GLN B:94 B:145 124.0 0.689 -48.6 123.8 124.0 0.689 0.0 HOH
2.970
O
O
GLN F:94 F:145 120.0 0.667 -48.7 125.3 NA NA NA
6sis 4 P40337 99.38 4e-117 X-RAY
2019-12-04 GLN D:94 D:145 112.0 0.622 -87.9 140.7 112.0 0.622 0.0
GLN H:94 H:145 113.0 0.628 -88.4 141.2 NA NA NA
7jto 4 P40337 99.38 4e-117 X-RAY
2021-10-06 GLN D:94 L:145 109.0 0.606 B -109.6 129.5 109.0 0.606 0.0 HOH
2.637
O
O
7jtp 3 P40337 99.38 4e-117 X-RAY
2021-10-06 GLN C:94 L:145 123.0 0.683 S -86.0 153.2 123.0 0.683 0.0 HOH
2.784
O
O
3zrc 3 P40337 98.77 4e-117 X-RAY
2012-03-07 GLN C:95 C:145 46.0 NA S 129.2 -100.5 46.0 NA NA
GLN F:95 F:145 111.0 0.617 7.9 -92.3 NA NA NA
GLN I:95 I:145 122.0 0.678 -99.2 137.5 NA NA NA
GLN L:95 L:145 129.0 0.717 -101.9 155.4 NA NA NA
3zrf 3 P40337 98.77 4e-117 X-RAY
2012-03-07 GLN C:95 C:145 61.0 NA 62.5 -157.5 61.0 NA NA
GLN F:95 F:145 55.0 NA 40.9 -127.8 NA NA NA
GLN I:95 I:145 117.0 0.65 142.3 130.6 NA NA NA
GLN L:95 L:145 133.0 0.739 S -135.4 160.0 NA NA NA
3ztc 3 P40337 98.77 4e-117 X-RAY
2012-07-25 GLN C:95 C:145 76.0 NA S 85.3 136.4 76.0 NA NA
GLN F:95 F:145 55.0 NA -93.5 153.2 NA NA NA
GLN I:95 I:145 137.0 0.761 -82.6 120.7 NA NA NA
GLN L:95 L:145 137.0 0.761 -86.8 141.1 NA NA NA
3zun 3 P40337 98.77 4e-117 X-RAY
2012-07-25 GLN C:95 NA:NA DO NA DO DO DO NA NA NA
GLN F:95 F:145 115.0 0.639 -83.9 145.8 NA NA NA
GLN I:95 I:145 110.0 0.611 -114.3 110.9 NA NA NA
GLN L:95 L:145 194.0 1.0 360.0 158.2 NA NA NA
4ajy 4 P40337 98.77 4e-117 X-RAY
2012-11-14 GLN D:95 V:145 58.0 NA B -78.7 123.5 58.0 NA NA HOH
6.922
O
O
4awj 3 P40337 98.77 4e-117 X-RAY
2012-11-14 GLN C:95 NA:NA DO NA DO DO DO NA NA NA
GLN F:95 F:145 51.0 NA -77.6 129.6 NA NA NA
GLN I:95 I:145 130.0 0.722 -125.4 112.1 NA NA NA
GLN L:95 L:145 127.0 0.706 -89.0 134.2 NA NA NA
6gmr 4 P40337 98.77 4e-117 X-RAY
2018-08-08 GLN D:95 V:145 58.0 NA B -78.7 123.7 58.0 NA NA HOH
2.806
O
O
1lm8 3 P40337 100.0 6e-117 X-RAY
2002-06-12 GLN C:92 V:145 127.0 0.706 B -88.6 124.3 127.0 0.706 0.0 HOH
2.948
O
O
1vcb 3 P40337 100.0 6e-117 X-RAY
1999-04-21 GLN C:92 C:145 99.0 0.55 38.9 -86.9 99.0 0.55 0.0 HOH
4.848
N
O
GLN F:92 F:145 99.0 0.55 38.6 -87.0 NA NA NA
GLN I:92 I:145 98.0 0.544 38.6 -85.8 NA NA NA
GLN L:92 L:145 99.0 0.55 37.9 -86.9 NA NA NA
5n4w 2 P40337 100.0 6e-117 X-RAY
2017-06-07 GLN B:92 NA:NA DO NA DO DO DO NA NA NA
6gfx 3 P40337 100.0 6e-117 X-RAY
2018-07-11 GLN C:92 C:145 123.0 0.683 -87.8 130.0 123.0 0.683 0.0 HOH
2.789
O
O
6i7q 4 P40337 100.0 6e-117 X-RAY
2019-11-27 GLN D:92 V:145 131.0 0.728 B -93.2 138.9 131.0 0.728 0.0 HOH
2.169
HE22
O
6i7r 4 P40337 100.0 6e-117 X-RAY
2019-11-27 GLN D:92 V:145 50.0 NA B -72.2 127.7 50.0 NA NA HOH
2.605
O
O
6r7f 9 P40337 100.0 6e-117 EM
2019-08-28 GLN I:92 V:145 141.0 0.783 B 82.3 -162.4 141.0 0.783 0.0
7khh 3 P40337 100.0 6e-116 X-RAY
2021-02-24 GLN C:107 C:145 115.0 0.639 -59.7 131.4 115.0 0.639 0.0 HOH
2.741
NE2
O
7cjb 1 P40337 100.0 8e-116 X-RAY
2021-07-14 GLN A:95 A:145 133.0 0.739 -81.6 130.5 133.0 0.739 0.0
GLN E:95 E:145 131.0 0.728 -78.5 127.3 NA NA NA
GLN I:95 I:145 124.0 0.689 -86.6 127.1 NA NA NA
GLN M:95 M:145 123.0 0.683 -80.0 126.8 NA NA NA
6zhc 1 P40337 100.0 4e-113 X-RAY
2020-08-05 GLN A:87 AAA:145 128.0 0.711 -101.0 133.4 128.0 0.711 0.0 EDO
GOL
GOL
HOH
3.760
9.769
4.138
2.528
C
O
OE1
O
C2
O3
O2
O
7pi4 1 P40337 100.0 4e-113 X-RAY
2021-09-29 GLN A:87 AAA:145 119.0 0.661 B -84.3 119.2 119.0 0.661 0.0
6fmi 3 P40337 99.34 1e-109 X-RAY
2018-04-11 GLN C:94 C:145 128.0 0.711 -117.8 118.1 128.0 0.711 0.0 HOH
3.225
O
O
GLN F:94 F:145 134.0 0.744 -95.2 133.6 NA NA NA
6fmj 3 P40337 99.34 1e-109 X-RAY
2018-04-11 GLN C:94 C:145 48.0 NA -93.4 154.4 48.0 NA NA HOH
3.371
CB
O
GLN F:94 F:145 54.0 NA -72.8 133.9 NA NA NA
GLN I:94 I:145 134.0 0.744 -91.5 126.1 NA NA NA
GLN L:94 L:145 116.0 0.644 -119.5 121.2 NA NA NA
6fmk 3 P40337 99.34 1e-109 X-RAY
2018-04-11 GLN C:94 C:145 136.0 0.756 -101.2 136.6 136.0 0.756 0.0 HOH
8.362
OE1
O
GLN F:94 F:145 119.0 0.661 -89.3 133.1 NA NA NA
GLN I:94 I:145 130.0 0.722 -91.5 124.9 NA NA NA
GLN L:94 L:145 110.0 0.611 -120.7 122.7 NA NA NA
6hr2 2 P40337 100.0 3e-108 X-RAY
2019-06-12 GLN B:85 B:145 113.0 0.628 -76.8 124.5 113.0 0.628 0.0 HOH
2.579
HB2
O
GLN F:85 F:145 117.0 0.65 -76.5 124.3 NA NA NA
6r6h 12 P40337 100.0 3e-107 EM
2019-08-28 GLN L:86 V:145 134.0 0.744 -65.3 175.0 133.0 0.739 0.005 A:Q13098:0.006

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p40337-f1 1 P40337 100.0 2e-156 GLN A:145 A:145 128.0 0.711 -74.8 133.8