Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 107799146 . G A CCDS43125.1:NM_198793.2:c.92aCg>aTg_NP_942088.1:p.31T>M Homo sapiens CD47 molecule (CD47), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7myz 1 Q08722,P0ABE7 99.35 3e-109 X-RAY
 2021-09-08 THR A:13 C:13 43.0 0.307 -117.6 169.8 43.0 0.307 0.0 NAG
 5.366
 N
 C1
THR B:13 D:13 56.0 0.4 -117.9 169.1 NA NA NA
5tz2 3 Q08722 98.39 1e-86 X-RAY
 2017-03-15 THR C:13 C:13 63.0 0.45 -127.4 -163.5 63.0 0.45 0.0 NAG
HOH
 5.167
8.247
 N
N
 C1
O
5tzu 3 Q08722 98.39 1e-86 X-RAY
 2017-03-15 THR C:13 C:13 47.0 0.336 -118.3 172.7 47.0 0.336 0.0 NAG
NAG
GOL
HOH
 5.156
9.798
7.583
3.400
 N
CG2
O
CB
 C1
C8
O3
O
5tzt 3 Q08722 98.37 2e-85 X-RAY
 2017-03-15 THR E:13 C:13 103.0 0.736 -151.3 -168.1 NA NA NA
THR F:13 D:13 56.0 0.4 -135.7 -172.6 56.0 0.4 0.0 NAG
 4.941
 CG2
 O6
2jjs 2 Q08722 93.55 1e-81 X-RAY
 2008-08-05 THR C:13 C:13 24.0 0.171 -124.9 -176.0 24.0 0.171 0.0 NAG
IOD
HOH
 5.236
4.232
2.782
 N
CG2
O
 C1
I
O
THR D:13 D:13 28.0 0.2 -125.3 -176.6 NA NA NA
2jjt 2 Q08722 93.55 1e-81 X-RAY
 2008-08-05 THR C:13 C:13 53.0 0.379 -115.8 178.5 53.0 0.379 0.0 NAG
 5.172
 N
 C1
THR D:13 D:13 57.0 0.407 -112.3 -176.1 NA NA NA
2vsc 1 Q08722 93.55 1e-81 X-RAY
 2008-08-12 THR A:13 A:13 76.0 0.543 -118.2 -171.4 38.0 0.271 0.272 B:Q08722:0.271
 NAG
HOH
 5.144
8.373
 N
N
 C1
O
THR B:13 B:13 81.0 0.579 -127.2 -179.7 34.0 0.243 0.336 A:Q08722:0.336
 NAG
HOH
 5.050
3.105
 N
O
 C1
O
THR C:13 C:13 90.0 0.643 -124.1 -173.7 NA NA NA
THR D:13 D:13 83.0 0.593 -131.8 -174.8 NA NA NA
4cmm 2 Q08722 93.55 1e-81 X-RAY
 2014-02-26 THR B:13 B:13 32.0 0.229 -122.6 -179.3 32.0 0.229 0.0 NAG
HOH
 5.170
2.736
 N
OG1
 C1
O
4kjy 1 Q08722 98.29 4e-80 X-RAY
 2013-06-12 THR A:13 A:13 85.0 0.607 -89.0 -168.4 85.0 0.607 0.0 HOH
 5.343
 N
 O
THR C:13 C:13 71.0 0.507 -110.6 -173.4 NA NA NA
5iwl 2 Q08722 97.37 2e-77 X-RAY
 2016-06-29 THR C:13 C:13 66.0 0.471 -130.0 174.6 66.0 0.471 0.0 NAG
 4.949
 N
 C1
THR D:13 D:13 65.0 0.464 -119.6 176.3 65.0 0.464 0.0 NAG
 5.356
 N
 C1

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q08722-f1 1 Q08722 100.0 0.0 THR A:31 A:31 24.0 0.171 -127.0 174.0