Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133557012 . G A CCDS3082.1:NM_016577.3:c.493Cag>Tag_NP_057661.3:p.165Q>* Homo sapiens RAB6B, member RAS oncogene family (RAB6B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 88.94 8e-141 X-RAY
 2012-10-17 GLN A:165 A:165 79.0 0.439 H -58.3 -42.5 79.0 0.439 0.0 HOH
 3.170
 NE2
 O
GLN B:165 B:165 80.0 0.444 H -66.9 -38.5 NA NA NA
3bbp 1 P20340 90.29 1e-139 X-RAY
 2008-02-05 GLN A:168 A:165 82.0 0.456 H -50.0 -38.6 82.0 0.456 0.0
GLN B:168 B:165 83.0 0.461 H -49.4 -38.5 83.0 0.461 0.0
GLN C:168 C:165 84.0 0.467 H -49.0 -38.4 NA NA NA
5lef 1 P20340 90.05 1e-127 X-RAY
 2017-11-15 GLN A:161 A:165 65.0 0.361 H -62.9 -40.9 65.0 0.361 0.0 GOL
HOH
 7.431
2.163
 HB3
HE22
 H12
O
GLN B:161 B:165 82.0 0.456 H -67.7 -38.2 82.0 0.456 0.0 HOH
 8.962
 O
 O
3cwz 1 P20340 90.96 6e-127 X-RAY
 2008-11-18 GLN A:158 A:165 62.0 0.344 H -61.6 -41.5 62.0 0.344 0.0
2y8e 1 O18334 92.05 2e-120 X-RAY
 2011-07-06 GLN A:166 A:164 70.0 0.389 H -60.1 -40.4 70.0 0.389 0.0 HOH
 6.305
 CG
 O
GLN B:166 B:164 59.0 0.328 H -61.2 -35.9 NA NA NA
2e9s 1 Q9NRW1 100.0 3e-117 X-RAY
 2008-01-29 GLN A:154 A:165 70.0 0.389 H -64.8 -34.6 70.0 0.389 0.0 HOH
 3.633
 CB
 O
GLN B:154 B:165 64.0 0.356 H -63.9 -37.3 NA NA NA
GLN C:154 C:165 78.0 0.433 H -60.5 -38.5 NA NA NA
2fe4 1 Q9NRW1 100.0 3e-117 X-RAY
 2006-07-04 GLN A:154 A:165 86.0 0.478 H -65.5 -31.4 86.0 0.478 0.0 HOH
 2.595
 NE2
 O
2ffq 1 Q9NRW1 100.0 3e-117 X-RAY
 2006-07-04 GLN A:154 A:165 71.0 0.394 H -62.9 -37.9 71.0 0.394 0.0 HOH
 3.039
 OE1
 O
1yzq 1 P20340 92.35 7e-117 X-RAY
 2005-07-26 GLN A:158 A:165 92.0 0.511 H -64.0 -41.9 92.0 0.511 0.0 HOH
 2.985
 OE1
 O
2gil 1 P20340 94.44 6e-112 X-RAY
 2006-06-27 GLN A:153 A:165 76.0 0.422 H -59.2 -39.4 76.0 0.422 0.0 HOH
 2.602
 NE2
 O
GLN B:153 B:165 73.0 0.406 H -66.9 -37.7 NA NA NA
GLN C:153 C:165 67.0 0.372 H -66.3 -30.9 NA NA NA
GLN D:153 D:165 71.0 0.394 H -67.4 -38.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9nrw1-f1 1 Q9NRW1 100.0 6e-156 GLN A:165 A:165 81.0 0.45 H -64.6 -41.9
af-p20340-f1 1 P20340 90.87 7e-144 GLN A:165 A:165 71.0 0.394 H -70.0 -37.1
af-q9h0n0-f1 1 Q9H0N0 82.21 2e-126 GLN A:165 A:165 78.0 0.433 H -68.5 -40.5
af-q53s08-f1 1 Q53S08 82.69 9e-126 GLN A:165 A:165 75.0 0.417 H -68.0 -40.4