Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133557023 . T A CCDS3082.1:NM_016577.3:c.482tAc>tTc_NP_057661.3:p.161Y>F Homo sapiens RAB6B, member RAS oncogene family (RAB6B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 88.94 8e-141 X-RAY
 2012-10-17 TYR A:161 A:161 119.0 0.517 B -93.3 119.8 119.0 0.517 0.0 GDP
HOH
 7.284
2.749
 N
OH
 O6
O
TYR B:161 B:161 123.0 0.535 B -71.4 120.7 NA NA NA
3bbp 1 P20340 90.29 1e-139 X-RAY
 2008-02-05 TYR A:164 A:161 125.0 0.543 B -70.4 126.7 125.0 0.543 0.0 GTP
 7.494
 O
 O6
TYR B:164 B:161 123.0 0.535 B -70.1 126.0 123.0 0.535 0.0 GTP
 7.485
 O
 O6
TYR C:164 C:161 124.0 0.539 B -71.1 126.4 NA NA NA
5lef 1 P20340 90.05 1e-127 X-RAY
 2017-11-15 TYR A:157 A:161 120.0 0.522 B -96.4 122.0 120.0 0.522 0.0 GTP
SO4
GOL
HOH
 6.587
8.008
7.281
1.806
 H
N
HH
HH
 O6
O3
O1
O
TYR B:157 B:161 125.0 0.543 B -70.3 123.6 125.0 0.543 0.0 GTP
SO4
SO4
HOH
 6.683
9.245
3.118
2.764
 H
H
HA
OH
 O6
O3
O2
O
3cwz 1 P20340 90.96 6e-127 X-RAY
 2008-11-18 TYR A:154 A:161 130.0 0.565 T -57.1 98.6 130.0 0.565 0.0 GTP
 7.769
 N
 O6
2y8e 1 O18334 92.05 2e-120 X-RAY
 2011-07-06 TYR A:162 A:160 123.0 0.535 B -108.0 123.3 123.0 0.535 0.0 GNP
HOH
 7.425
2.636
 O
OH
 O6
O
TYR B:162 B:160 114.0 0.496 T -55.5 123.3 NA NA NA
2e9s 1 Q9NRW1 100.0 3e-117 X-RAY
 2008-01-29 TYR A:150 A:161 121.0 0.526 T -48.2 121.9 121.0 0.526 0.0 GDP
HOH
 7.394
2.766
 O
OH
 O6
O
TYR B:150 B:161 124.0 0.539 T -50.2 121.1 NA NA NA
TYR C:150 C:161 123.0 0.535 T -50.9 121.6 NA NA NA
2fe4 1 Q9NRW1 100.0 3e-117 X-RAY
 2006-07-04 TYR A:150 A:161 121.0 0.526 T -51.4 120.9 121.0 0.526 0.0 GDP
HOH
 7.356
3.308
 O
CE1
 O6
O
2ffq 1 Q9NRW1 100.0 3e-117 X-RAY
 2006-07-04 TYR A:150 A:161 124.0 0.539 T -51.7 122.3 124.0 0.539 0.0 GSP
HOH
 7.371
2.578
 O
OH
 O6
O
1yzq 1 P20340 92.35 7e-117 X-RAY
 2005-07-26 TYR A:154 A:161 131.0 0.57 T -58.7 124.2 131.0 0.57 0.0 GNP
HOH
 7.342
2.680
 O
OH
 O6
O
2gil 1 P20340 94.44 6e-112 X-RAY
 2006-06-27 TYR A:149 A:161 126.0 0.548 B -110.4 125.6 126.0 0.548 0.0 GTP
HOH
 7.351
3.821
 O
CB
 O6
O
TYR B:149 B:161 119.0 0.517 B -106.9 122.8 NA NA NA
TYR C:149 C:161 146.0 0.635 B -119.2 128.5 NA NA NA
TYR D:149 D:161 119.0 0.517 B -104.6 122.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9nrw1-f1 1 Q9NRW1 100.0 6e-156 TYR A:161 A:161 125.0 0.543 T -53.3 126.2
af-p20340-f1 1 P20340 90.87 7e-144 TYR A:161 A:161 125.0 0.543 T -59.9 128.4
af-q9h0n0-f1 1 Q9H0N0 82.21 2e-126 TYR A:161 A:161 118.0 0.513 B -59.7 127.5
af-q53s08-f1 1 Q53S08 82.69 9e-126 TYR A:161 A:161 135.0 0.587 B -59.0 127.7