Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133557072 . C A CCDS3082.1:NM_016577.3:c.433Gcc>Tcc_NP_057661.3:p.145A>S Homo sapiens RAB6B, member RAS oncogene family (RAB6B), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 88.94 8e-141 X-RAY
 2012-10-17 ALA A:145 A:145 3.0 0.026 H -58.4 -42.2 3.0 0.026 0.0 HOH
 3.789
 CB
 O
ALA B:145 B:145 4.0 0.035 H -63.2 -44.2 NA NA NA
3bbp 1 P20340 90.29 1e-139 X-RAY
 2008-02-05 ALA A:148 A:145 4.0 0.035 H -62.3 -50.5 4.0 0.035 0.0
ALA B:148 B:145 4.0 0.035 H -61.9 -50.7 4.0 0.035 0.0
ALA C:148 C:145 5.0 0.043 H -61.9 -51.1 NA NA NA
5lef 1 P20340 90.05 1e-127 X-RAY
 2017-11-15 ALA A:141 A:145 2.0 0.017 H -62.9 -38.5 2.0 0.017 0.0 GOL
HOH
 4.657
2.979
 HB3
HB3
 HO3
O
ALA B:141 B:145 5.0 0.043 H -67.2 -42.2 5.0 0.043 0.0 HOH
 2.957
 HB3
 O
3cwz 1 P20340 90.96 6e-127 X-RAY
 2008-11-18 ALA A:138 A:145 5.0 0.043 H -84.2 -18.7 5.0 0.043 0.0
2y8e 1 O18334 92.05 2e-120 X-RAY
 2011-07-06 ALA A:146 A:144 2.0 0.017 H -58.9 -46.8 2.0 0.017 0.0 HOH
 3.810
 CB
 O
ALA B:146 B:144 4.0 0.035 H -61.2 -41.8 NA NA NA
2e9s 1 Q9NRW1 100.0 3e-117 X-RAY
 2008-01-29 ALA A:134 A:145 2.0 0.017 H -64.1 -41.5 2.0 0.017 0.0 HOH
 4.025
 CB
 O
ALA B:134 B:145 3.0 0.026 H -61.0 -41.3 NA NA NA
ALA C:134 C:145 2.0 0.017 H -63.6 -42.3 NA NA NA
2fe4 1 Q9NRW1 100.0 3e-117 X-RAY
 2006-07-04 ALA A:134 A:145 3.0 0.026 H -66.7 -41.3 3.0 0.026 0.0 HOH
 5.632
 O
 O
2ffq 1 Q9NRW1 100.0 3e-117 X-RAY
 2006-07-04 ALA A:134 A:145 3.0 0.026 H -63.2 -41.5 3.0 0.026 0.0 HOH
 3.844
 CB
 O
1yzq 1 P20340 92.35 7e-117 X-RAY
 2005-07-26 ALA A:138 A:145 3.0 0.026 H -57.4 -46.1 3.0 0.026 0.0 HOH
 3.859
 CB
 O
2gil 1 P20340 94.44 6e-112 X-RAY
 2006-06-27 ALA A:133 A:145 5.0 0.043 H -60.1 -43.1 5.0 0.043 0.0 HOH
 3.814
 CB
 O
ALA B:133 B:145 3.0 0.026 H -65.5 -40.5 NA NA NA
ALA C:133 C:145 4.0 0.035 H -60.5 -43.8 NA NA NA
ALA D:133 D:145 4.0 0.035 H -64.0 -37.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9nrw1-f1 1 Q9NRW1 100.0 6e-156 ALA A:145 A:145 4.0 0.035 H -64.6 -38.8
af-p20340-f1 1 P20340 90.87 7e-144 ALA A:145 A:145 2.0 0.017 H -63.6 -40.6
af-q9h0n0-f1 1 Q9H0N0 82.21 2e-126 ALA A:145 A:145 2.0 0.017 H -62.1 -44.1
af-q53s08-f1 1 Q53S08 82.69 9e-126 ALA A:145 A:145 2.0 0.017 H -61.8 -44.2