Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133558368 . G A CCDS3082.1:NM_016577.3:c.383aCg>aTg_NP_057661.3:p.128T>M Homo sapiens RAB6B, member RAS oncogene family (RAB6B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 88.94 8e-141 X-RAY
 2012-10-17 THR A:128 A:128 26.0 0.186 T -58.5 -23.7 26.0 0.186 0.0 GDP
HOH
 5.001
2.761
 N
OG1
 O6
O
THR B:128 B:128 28.0 0.2 G -59.0 -21.3 NA NA NA
3bbp 1 P20340 90.29 1e-139 X-RAY
 2008-02-05 THR A:131 A:128 26.0 0.186 G -69.5 -23.1 26.0 0.186 0.0 GTP
 4.851
 N
 O6
THR B:131 B:128 27.0 0.193 G -69.3 -21.6 27.0 0.193 0.0 GTP
 4.854
 N
 O6
THR C:131 C:128 27.0 0.193 G -68.6 -22.4 NA NA NA
5lef 1 P20340 90.05 1e-127 X-RAY
 2017-11-15 THR A:124 A:128 28.0 0.2 T -62.3 -20.7 28.0 0.2 0.0 GTP
GOL
HOH
 4.781
9.391
2.819
 H
HG21
HG1
 O6
HO2
O
THR B:124 B:128 27.0 0.193 T -57.8 -21.3 27.0 0.193 0.0 GTP
SO4
HOH
 4.828
8.711
4.640
 H
HG1
HG21
 O6
O2
O
3cwz 1 P20340 90.96 6e-127 X-RAY
 2008-11-18 THR A:121 A:128 35.0 0.25 -94.5 9.9 35.0 0.25 0.0 GTP
 4.763
 N
 O6
2y8e 1 O18334 92.05 2e-120 X-RAY
 2011-07-06 THR A:129 A:127 24.0 0.171 G -71.0 -9.5 24.0 0.171 0.0 GNP
HOH
 5.066
2.783
 N
O
 O6
O
THR B:129 B:127 21.0 0.15 G -67.7 -11.3 NA NA NA
2e9s 1 Q9NRW1 100.0 3e-117 X-RAY
 2008-01-29 THR A:117 A:128 24.0 0.171 T -61.2 -14.7 24.0 0.171 0.0 GDP
HOH
 4.865
2.722
 N
OG1
 O6
O
THR B:117 B:128 24.0 0.171 T -61.0 -17.2 NA NA NA
THR C:117 C:128 25.0 0.179 T -60.8 -22.0 NA NA NA
2fe4 1 Q9NRW1 100.0 3e-117 X-RAY
 2006-07-04 THR A:117 A:128 24.0 0.171 T -58.7 -19.4 24.0 0.171 0.0 GDP
HOH
 5.002
2.806
 N
O
 O6
O
2ffq 1 Q9NRW1 100.0 3e-117 X-RAY
 2006-07-04 THR A:117 A:128 25.0 0.179 T -60.8 -20.3 25.0 0.179 0.0 GSP
HOH
 4.879
2.592
 N
O
 O6
O
1yzq 1 P20340 92.35 7e-117 X-RAY
 2005-07-26 THR A:121 A:128 25.0 0.179 T -68.3 -9.4 25.0 0.179 0.0 GNP
HOH
 4.961
2.816
 N
OG1
 O6
O
2gil 1 P20340 94.44 6e-112 X-RAY
 2006-06-27 THR A:116 A:128 25.0 0.179 T -63.4 -21.9 25.0 0.179 0.0 GTP
HOH
 4.983
2.694
 N
O
 O6
O
THR B:116 B:128 25.0 0.179 T -64.0 -15.0 NA NA NA
THR C:116 C:128 29.0 0.207 T -62.4 -17.9 NA NA NA
THR D:116 D:128 23.0 0.164 T -71.0 -13.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9nrw1-f1 1 Q9NRW1 100.0 6e-156 THR A:128 A:128 22.0 0.157 G -61.3 -13.4
af-p20340-f1 1 P20340 90.87 7e-144 THR A:128 A:128 24.0 0.171 G -61.7 -13.6
af-q9h0n0-f1 1 Q9H0N0 82.21 2e-126 THR A:128 A:128 4.0 0.029 G -69.8 1.0
af-q53s08-f1 1 Q53S08 82.69 9e-126 THR A:128 A:128 11.0 0.079 G -61.2 -6.4