Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr3 | 133560191 | . | C | A | CCDS3082.1:NM_016577.3:c.227cGc>cTc_NP_057661.3:p.76R>L | Homo sapiens RAB6B, member RAS oncogene family (RAB6B), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4dkx | 1 | P20340 | 88.94 | 8e-141 |
X-RAY |
2012-10-17 | ARG | A:76 | A:76 | 118.0 | 0.524 | G | -54.8 | -37.1 | 118.0 | 0.524 | 0.0 |
HOH |
2.219 |
NH1 |
O |
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| ARG | B:76 | B:76 | 149.0 | 0.662 | G | -43.7 | -38.1 | NA | NA | NA | |||||||||||||
| 3bbp | 1 | P20340 | 90.29 | 1e-139 |
X-RAY |
2008-02-05 | ARG | A:79 | A:76 | 39.0 | 0.173 | G | -117.8 | -16.4 | 39.0 | 0.173 | 0.0 |
GTP |
7.782 |
NH2 |
O1G |
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| ARG | B:79 | B:76 | 39.0 | 0.173 | G | -117.1 | -16.6 | 39.0 | 0.173 | 0.0 |
GTP |
7.774 |
NH2 |
O1G |
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| ARG | C:79 | C:76 | 40.0 | 0.178 | G | -117.8 | -16.0 | NA | NA | NA | |||||||||||||
| 5lef | 1 | P20340 | 90.05 | 1e-127 |
X-RAY |
2017-11-15 | ARG | A:72 | A:76 | 60.0 | 0.267 | G | -60.2 | -32.6 | 60.0 | 0.267 | 0.0 |
GTP HOH |
6.667 2.097 |
HH21 HE |
O3G O |
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| ARG | B:72 | B:76 | 78.0 | 0.347 | G | -57.7 | -42.8 | 78.0 | 0.347 | 0.0 |
GTP HOH |
6.494 3.139 |
HH21 HH22 |
O1G O |
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| 3cwz | 1 | P20340 | 90.96 | 6e-127 |
X-RAY |
2008-11-18 | ARG | A:69 | A:76 | 59.0 | 0.262 | G | -56.5 | -43.5 | 59.0 | 0.262 | 0.0 |
GTP HOH |
7.845 4.423 |
NH2 CD |
O2G O |
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| 2y8e | 1 | O18334 | 92.05 | 2e-120 |
X-RAY |
2011-07-06 | ARG | A:77 | A:75 | 66.0 | 0.293 | G | -66.9 | -29.8 | 66.0 | 0.293 | 0.0 |
HOH |
3.212 |
N |
O |
||
| ARG | B:77 | B:75 | 73.0 | 0.324 | G | -60.4 | -33.9 | NA | NA | NA | |||||||||||||
| 2e9s | 1 | Q9NRW1 | 100.0 | 3e-117 |
X-RAY |
2008-01-29 | ARG | A:65 | A:76 | 126.0 | 0.56 | G | -50.3 | -46.2 | 126.0 | 0.56 | 0.0 |
NO3 HOH |
9.807 3.162 |
N NE |
O2 O |
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| ARG | B:65 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| ARG | C:65 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 2fe4 | 1 | Q9NRW1 | 100.0 | 3e-117 |
X-RAY |
2006-07-04 | ARG | A:65 | A:76 | 61.0 | 0.271 | S | -103.6 | -5.1 | 61.0 | 0.271 | 0.0 |
NO3 HOH |
9.381 4.552 |
CD NH2 |
O2 O |
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| 2ffq | 1 | Q9NRW1 | 100.0 | 3e-117 |
X-RAY |
2006-07-04 | ARG | A:65 | A:76 | 177.0 | 0.787 | G | -56.1 | -35.3 | 177.0 | 0.787 | 0.0 |
GSP HOH |
9.615 3.153 |
N N |
O3G O |
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| 1yzq | 1 | P20340 | 92.35 | 7e-117 |
X-RAY |
2005-07-26 | ARG | A:69 | A:76 | 57.0 | NA | G | -52.6 | -37.2 | 57.0 | NA | NA |
GNP HOH |
9.971 3.430 |
N N |
O3G O |
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| 2gil | 1 | P20340 | 94.44 | 6e-112 |
X-RAY |
2006-06-27 | ARG | A:64 | A:76 | 65.0 | 0.289 | -94.1 | 47.5 | 65.0 | 0.289 | 0.0 |
GTP HOH |
7.901 2.762 |
NH2 NH1 |
O3G O |
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| ARG | B:64 | B:76 | 44.0 | 0.196 | G | -69.8 | -26.9 | NA | NA | NA | |||||||||||||
| ARG | C:64 | C:76 | 58.0 | 0.258 | G | -31.8 | -49.0 | NA | NA | NA | |||||||||||||
| ARG | D:64 | D:76 | 79.0 | 0.351 | G | -61.4 | -30.1 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9nrw1-f1 | 1 | Q9NRW1 | 100.0 | 6e-156 | ARG | A:76 | A:76 | 46.0 | 0.204 | G | -59.4 | -30.9 | |
| af-p20340-f1 | 1 | P20340 | 90.87 | 7e-144 | ARG | A:76 | A:76 | 49.0 | 0.218 | G | -60.0 | -30.6 | |
| af-q9h0n0-f1 | 1 | Q9H0N0 | 82.21 | 2e-126 | ARG | A:76 | A:76 | 67.0 | 0.298 | T | -57.8 | -27.8 | |
| af-q53s08-f1 | 1 | Q53S08 | 82.69 | 9e-126 | ARG | A:76 | A:76 | 75.0 | 0.333 | T | -58.3 | -30.1 | |