Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 133583465 . G A CCDS3082.1:NM_016577.3:c.92aCg>aTg_NP_057661.3:p.31T>M Homo sapiens RAB6B, member RAS oncogene family (RAB6B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4dkx 1 P20340 88.94 8e-141 X-RAY
 2012-10-17 THR A:31 A:31 30.0 0.214 H -55.0 -50.7 30.0 0.214 0.0 GDP
MG
HOH
 6.800
8.355
3.585
 OG1
OG1
CB
 O1A
MG
O
THR B:31 B:31 34.0 0.243 H -64.1 -45.3 NA NA NA
3bbp 1 P20340 90.29 1e-139 X-RAY
 2008-02-05 THR A:34 A:31 35.0 0.25 H -65.5 -47.4 35.0 0.25 0.0 MG
GTP
 8.871
6.949
 OG1
OG1
 MG
O1A
THR B:34 B:31 35.0 0.25 H -66.0 -47.0 35.0 0.25 0.0 MG
GTP
 9.048
6.966
 OG1
OG1
 MG
O1A
THR C:34 C:31 37.0 0.264 H -65.9 -47.3 NA NA NA
5lef 1 P20340 90.05 1e-127 X-RAY
 2017-11-15 THR A:27 A:31 41.0 0.293 H -61.3 -44.0 41.0 0.293 0.0 GTP
MG
SO4
HOH
 6.211
7.611
8.146
2.747
 HG1
HG1
HG22
HB
 O1A
MG
O2
O
THR B:27 B:31 37.0 0.264 H -65.1 -37.5 37.0 0.264 0.0 GTP
MG
SO4
IPA
HOH
 6.363
7.459
7.145
4.524
2.616
 HG1
HG1
HG22
HG1
HG21
 O2A
MG
O2
H32
O
3cwz 1 P20340 90.96 6e-127 X-RAY
 2008-11-18 THR A:24 A:31 48.0 0.343 H -70.1 -32.8 48.0 0.343 0.0 MG
GTP
HOH
 8.831
7.272
3.683
 OG1
OG1
CG2
 MG
O1A
O
2y8e 1 O18334 92.05 2e-120 X-RAY
 2011-07-06 THR A:32 A:30 35.0 0.25 H -70.4 -31.3 35.0 0.25 0.0 GNP
MG
HOH
 6.657
8.353
2.737
 OG1
CG2
OG1
 O1A
MG
O
THR B:32 B:30 38.0 0.271 H -67.1 -38.7 NA NA NA
2e9s 1 Q9NRW1 100.0 3e-117 X-RAY
 2008-01-29 THR A:20 A:31 39.0 0.279 H -63.2 -36.8 39.0 0.279 0.0 MG
GDP
HOH
 8.232
6.695
2.743
 OG1
OG1
OG1
 MG
O2A
O
THR B:20 B:31 42.0 0.3 H -62.4 -42.7 NA NA NA
THR C:20 C:31 42.0 0.3 H -59.7 -45.0 NA NA NA
2fe4 1 Q9NRW1 100.0 3e-117 X-RAY
 2006-07-04 THR A:20 A:31 34.0 0.243 H -58.7 -40.0 34.0 0.243 0.0 MG
GDP
HOH
 7.915
6.855
3.824
 OG1
OG1
CB
 MG
O2A
O
2ffq 1 Q9NRW1 100.0 3e-117 X-RAY
 2006-07-04 THR A:20 A:31 40.0 0.286 H -65.5 -40.1 40.0 0.286 0.0 MG
GSP
HOH
 7.978
7.001
2.821
 OG1
OG1
OG1
 MG
O1A
O
1yzq 1 P20340 92.35 7e-117 X-RAY
 2005-07-26 THR A:24 A:31 39.0 0.279 H -59.7 -43.2 39.0 0.279 0.0 MG
GNP
HOH
 8.157
6.766
2.805
 OG1
OG1
OG1
 MG
O1A
O
2gil 1 P20340 94.44 6e-112 X-RAY
 2006-06-27 THR A:19 A:31 47.0 0.336 H -63.4 -40.8 47.0 0.336 0.0 MG
GTP
HOH
 8.198
6.846
3.132
 OG1
OG1
OG1
 MG
O1A
O
THR B:19 B:31 49.0 0.35 H -58.6 -47.0 NA NA NA
THR C:19 C:31 48.0 0.343 H -70.0 -39.1 NA NA NA
THR D:19 D:31 47.0 0.336 H -56.8 -44.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9nrw1-f1 1 Q9NRW1 100.0 6e-156 THR A:31 A:31 35.0 0.25 H -56.2 -46.1
af-p20340-f1 1 P20340 90.87 7e-144 THR A:31 A:31 34.0 0.243 H -56.4 -45.7
af-q9h0n0-f1 1 Q9H0N0 82.21 2e-126 THR A:31 A:31 35.0 0.25 H -61.1 -44.1
af-q53s08-f1 1 Q53S08 82.69 9e-126 THR A:31 A:31 37.0 0.264 H -60.2 -44.3