Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr3 | 20019805 | . | G | A | CCDS2633.1:NM_004162.4:c.442Gca>Aca_NP_004153.2:p.148A>T | Homo sapiens RAB5A, member RAS oncogene family (RAB5A), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4q9u | 2 | P20339 | 99.42 | 2e-126 |
X-RAY |
2014-07-23 | ALA | B:135 | B:148 | 0.0 | 0.0 | H | -71.2 | -36.3 | 0.0 | 0.0 | 0.0 | ||||||
ALA | F:135 | F:148 | 13.0 | 0.113 | H | -59.2 | -37.3 | 13.0 | 0.113 | 0.0 | |||||||||||||
1tu3 | 1 | P20339 | 100.0 | 3e-126 |
X-RAY |
2004-10-05 | ALA | A:135 | A:148 | 0.0 | 0.0 | H | -97.9 | -32.8 | 0.0 | 0.0 | 0.0 |
HOH |
4.138 |
CB |
O |
||
ALA | B:135 | B:148 | 0.0 | 0.0 | H | -68.1 | -39.4 | 0.0 | 0.0 | 0.0 |
HOH |
4.899 |
N |
O |
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ALA | C:135 | C:148 | 0.0 | 0.0 | H | -63.8 | -36.6 | NA | NA | NA | |||||||||||||
ALA | D:135 | D:148 | 0.0 | 0.0 | H | -54.5 | -41.4 | NA | NA | NA | |||||||||||||
ALA | E:135 | E:148 | 0.0 | 0.0 | H | -74.7 | -42.3 | NA | NA | NA | |||||||||||||
1tu4 | 1 | P20339 | 100.0 | 3e-126 |
X-RAY |
2004-10-05 | ALA | A:135 | A:148 | 0.0 | 0.0 | H | -62.5 | -40.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.318 |
CB |
O |
||
ALA | B:135 | B:148 | 0.0 | 0.0 | H | -60.6 | -45.6 | NA | NA | NA | |||||||||||||
ALA | C:135 | C:148 | 0.0 | 0.0 | H | -60.4 | -33.2 | NA | NA | NA | |||||||||||||
ALA | D:135 | D:148 | 0.0 | 0.0 | H | -75.7 | -44.6 | NA | NA | NA | |||||||||||||
1n6h | 1 | P20339 | 100.0 | 3e-126 |
X-RAY |
2002-11-27 | ALA | A:134 | A:148 | 0.0 | 0.0 | H | -68.0 | -39.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.065 |
CB |
O |
||
1r2q | 1 | P20339 | 100.0 | 3e-126 |
X-RAY |
2003-12-23 | ALA | A:134 | A:148 | 0.0 | 0.0 | H | -66.3 | -39.7 | 0.0 | 0.0 | 0.0 |
HOH |
4.094 |
CB |
O |
||
1n6p | 1 | P20339 | 99.41 | 2e-125 |
X-RAY |
2002-11-27 | ALA | A:134 | A:148 | 0.0 | 0.0 | H | -67.5 | -39.0 | 0.0 | 0.0 | 0.0 |
HOH |
4.056 |
CB |
O |
||
1n6o | 1 | P20339 | 99.41 | 2e-125 |
X-RAY |
2002-11-27 | ALA | A:134 | A:148 | 0.0 | 0.0 | H | -66.8 | -38.8 | 0.0 | 0.0 | 0.0 |
HOH |
4.024 |
CB |
O |
||
1n6r | 1 | P20339 | 99.41 | 2e-125 |
X-RAY |
2002-11-27 | ALA | A:134 | A:148 | 0.0 | 0.0 | H | -67.5 | -39.6 | 0.0 | 0.0 | 0.0 |
HOH |
4.060 |
CB |
O |
||
1n6n | 1 | P20339 | 99.41 | 3e-125 |
X-RAY |
2002-11-27 | ALA | A:134 | A:148 | 0.0 | 0.0 | H | -68.2 | -39.0 | 0.0 | 0.0 | 0.0 |
HOH |
4.118 |
CB |
O |
||
1n6i | 1 | P20339 | 99.41 | 4e-125 |
X-RAY |
2002-11-27 | ALA | A:134 | A:148 | 0.0 | 0.0 | H | -66.9 | -39.2 | 0.0 | 0.0 | 0.0 |
HOH |
4.015 |
CB |
O |
||
1n6k | 1 | P20339 | 99.41 | 4e-125 |
X-RAY |
2002-11-27 | ALA | A:134 | A:148 | 0.0 | 0.0 | H | -66.2 | -39.8 | 0.0 | 0.0 | 0.0 |
HOH |
4.024 |
CB |
O |
||
1n6l | 1 | P20339 | 99.41 | 4e-125 |
X-RAY |
2002-11-27 | ALA | A:134 | A:148 | 0.0 | 0.0 | H | -68.1 | -39.5 | 0.0 | 0.0 | 0.0 |
HOH |
4.069 |
CB |
O |
||
3mjh | 1 | P20339 | 99.4 | 2e-123 |
X-RAY |
2010-05-05 | ALA | A:133 | A:148 | 0.0 | 0.0 | H | -67.4 | -39.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.153 |
CB |
O |
||
ALA | C:133 | C:148 | 0.0 | 0.0 | H | -72.0 | -42.3 | NA | NA | NA | |||||||||||||
7bl1 | 6 | P20339 | 98.21 | 2e-121 |
EM |
2021-03-03 | ALA | F:133 | DDD:148 | 0.0 | 0.0 | H | -66.1 | -41.4 | 0.0 | 0.0 | 0.0 | ||||||
2hei | 1 | P61020 | 88.14 | 2e-119 |
X-RAY |
2006-07-04 | ALA | A:136 | A:148 | 0.0 | 0.0 | H | -65.7 | -39.1 | 0.0 | 0.0 | 0.0 |
HOH |
4.264 |
CB |
O |
||
ALA | B:136 | B:148 | 0.0 | 0.0 | H | -64.1 | -45.1 | 0.0 | 0.0 | 0.0 |
HOH |
4.010 |
CB |
O |
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4kyi | 2 | P51148 | 93.41 | 1e-116 |
X-RAY |
2014-08-13 | ALA | B:137 | B:149 | 0.0 | 0.0 | H | -66.6 | -38.8 | 0.0 | 0.0 | 0.0 | ||||||
ALA | D:137 | D:149 | 0.0 | 0.0 | H | -82.3 | -38.1 | NA | NA | NA | |||||||||||||
ALA | F:137 | F:149 | 0.0 | 0.0 | H | -84.6 | -35.3 | NA | NA | NA | |||||||||||||
ALA | H:137 | H:149 | 0.0 | 0.0 | H | -75.5 | -37.5 | NA | NA | NA | |||||||||||||
1huq | 1 | P35278 | 94.51 | 4e-116 |
X-RAY |
2001-02-07 | ALA | A:131 | A:149 | 0.0 | 0.0 | H | -66.4 | -37.3 | 0.0 | 0.0 | 0.0 |
HOH |
4.050 |
CB |
O |
||
1z0d | 1 | P35278 | 93.94 | 7e-116 |
X-RAY |
2005-07-26 | ALA | A:133 | A:149 | 0.0 | 0.0 | H | -65.7 | -39.5 | 0.0 | 0.0 | 0.0 |
HOH |
4.304 |
CB |
O |
||
ALA | B:133 | C:149 | 0.0 | 0.0 | H | -69.4 | -41.0 | NA | NA | NA | |||||||||||||
1z07 | 1 | P35278 | 93.9 | 8e-115 |
X-RAY |
2005-07-26 | ALA | A:133 | A:149 | 0.0 | 0.0 | H | -64.4 | -39.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.133 |
CB |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p20339-f1 | 1 | P20339 | 100.0 | 3e-164 | ALA | A:148 | A:148 | 0.0 | 0.0 | H | -66.6 | -41.6 | |
af-p51148-f1 | 1 | P51148 | 87.04 | 2e-140 | ALA | A:149 | A:149 | 0.0 | 0.0 | H | -70.0 | -39.8 | |
af-p61020-f1 | 1 | P61020 | 81.86 | 1e-135 | ALA | A:148 | A:148 | 0.0 | 0.0 | H | -71.1 | -39.6 |