Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 20019806 . C A CCDS2633.1:NM_004162.4:c.443gCa>gAa_NP_004153.2:p.148A>E Homo sapiens RAB5A, member RAS oncogene family (RAB5A), transcript variant 1, mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4q9u 2 P20339 99.42 2e-126 X-RAY
 2014-07-23 ALA B:135 B:148 0.0 0.0 H -71.2 -36.3 0.0 0.0 0.0
ALA F:135 F:148 13.0 0.113 H -59.2 -37.3 13.0 0.113 0.0
1tu3 1 P20339 100.0 3e-126 X-RAY
 2004-10-05 ALA A:135 A:148 0.0 0.0 H -97.9 -32.8 0.0 0.0 0.0 HOH
 4.138
 CB
 O
ALA B:135 B:148 0.0 0.0 H -68.1 -39.4 0.0 0.0 0.0 HOH
 4.899
 N
 O
ALA C:135 C:148 0.0 0.0 H -63.8 -36.6 NA NA NA
ALA D:135 D:148 0.0 0.0 H -54.5 -41.4 NA NA NA
ALA E:135 E:148 0.0 0.0 H -74.7 -42.3 NA NA NA
1tu4 1 P20339 100.0 3e-126 X-RAY
 2004-10-05 ALA A:135 A:148 0.0 0.0 H -62.5 -40.9 0.0 0.0 0.0 HOH
 4.318
 CB
 O
ALA B:135 B:148 0.0 0.0 H -60.6 -45.6 NA NA NA
ALA C:135 C:148 0.0 0.0 H -60.4 -33.2 NA NA NA
ALA D:135 D:148 0.0 0.0 H -75.7 -44.6 NA NA NA
1n6h 1 P20339 100.0 3e-126 X-RAY
 2002-11-27 ALA A:134 A:148 0.0 0.0 H -68.0 -39.9 0.0 0.0 0.0 HOH
 4.065
 CB
 O
1r2q 1 P20339 100.0 3e-126 X-RAY
 2003-12-23 ALA A:134 A:148 0.0 0.0 H -66.3 -39.7 0.0 0.0 0.0 HOH
 4.094
 CB
 O
1n6p 1 P20339 99.41 2e-125 X-RAY
 2002-11-27 ALA A:134 A:148 0.0 0.0 H -67.5 -39.0 0.0 0.0 0.0 HOH
 4.056
 CB
 O
1n6o 1 P20339 99.41 2e-125 X-RAY
 2002-11-27 ALA A:134 A:148 0.0 0.0 H -66.8 -38.8 0.0 0.0 0.0 HOH
 4.024
 CB
 O
1n6r 1 P20339 99.41 2e-125 X-RAY
 2002-11-27 ALA A:134 A:148 0.0 0.0 H -67.5 -39.6 0.0 0.0 0.0 HOH
 4.060
 CB
 O
1n6n 1 P20339 99.41 3e-125 X-RAY
 2002-11-27 ALA A:134 A:148 0.0 0.0 H -68.2 -39.0 0.0 0.0 0.0 HOH
 4.118
 CB
 O
1n6i 1 P20339 99.41 4e-125 X-RAY
 2002-11-27 ALA A:134 A:148 0.0 0.0 H -66.9 -39.2 0.0 0.0 0.0 HOH
 4.015
 CB
 O
1n6k 1 P20339 99.41 4e-125 X-RAY
 2002-11-27 ALA A:134 A:148 0.0 0.0 H -66.2 -39.8 0.0 0.0 0.0 HOH
 4.024
 CB
 O
1n6l 1 P20339 99.41 4e-125 X-RAY
 2002-11-27 ALA A:134 A:148 0.0 0.0 H -68.1 -39.5 0.0 0.0 0.0 HOH
 4.069
 CB
 O
3mjh 1 P20339 99.4 2e-123 X-RAY
 2010-05-05 ALA A:133 A:148 0.0 0.0 H -67.4 -39.9 0.0 0.0 0.0 HOH
 4.153
 CB
 O
ALA C:133 C:148 0.0 0.0 H -72.0 -42.3 NA NA NA
7bl1 6 P20339 98.21 2e-121 EM
 2021-03-03 ALA F:133 DDD:148 0.0 0.0 H -66.1 -41.4 0.0 0.0 0.0
2hei 1 P61020 88.14 2e-119 X-RAY
 2006-07-04 ALA A:136 A:148 0.0 0.0 H -65.7 -39.1 0.0 0.0 0.0 HOH
 4.264
 CB
 O
ALA B:136 B:148 0.0 0.0 H -64.1 -45.1 0.0 0.0 0.0 HOH
 4.010
 CB
 O
4kyi 2 P51148 93.41 1e-116 X-RAY
 2014-08-13 ALA B:137 B:149 0.0 0.0 H -66.6 -38.8 0.0 0.0 0.0
ALA D:137 D:149 0.0 0.0 H -82.3 -38.1 NA NA NA
ALA F:137 F:149 0.0 0.0 H -84.6 -35.3 NA NA NA
ALA H:137 H:149 0.0 0.0 H -75.5 -37.5 NA NA NA
1huq 1 P35278 94.51 4e-116 X-RAY
 2001-02-07 ALA A:131 A:149 0.0 0.0 H -66.4 -37.3 0.0 0.0 0.0 HOH
 4.050
 CB
 O
1z0d 1 P35278 93.94 7e-116 X-RAY
 2005-07-26 ALA A:133 A:149 0.0 0.0 H -65.7 -39.5 0.0 0.0 0.0 HOH
 4.304
 CB
 O
ALA B:133 C:149 0.0 0.0 H -69.4 -41.0 NA NA NA
1z07 1 P35278 93.9 8e-115 X-RAY
 2005-07-26 ALA A:133 A:149 0.0 0.0 H -64.4 -39.9 0.0 0.0 0.0 HOH
 4.133
 CB
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20339-f1 1 P20339 100.0 3e-164 ALA A:148 A:148 0.0 0.0 H -66.6 -41.6
af-p51148-f1 1 P51148 87.04 2e-140 ALA A:149 A:149 0.0 0.0 H -70.0 -39.8
af-p61020-f1 1 P61020 81.86 1e-135 ALA A:148 A:148 0.0 0.0 H -71.1 -39.6