Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 38006105 . A C CCDS33734.1:NM_001008392.1:c.311tAt>tCt_NP_001008393.1:p.104Y>S Homo sapiens CTD small phosphatase like (CTDSPL), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2hhl 1 O15194 100.0 5e-134 X-RAY
 2006-08-29 TYR A:26 A:26 147.0 0.639 T -50.6 138.9 147.0 0.639 0.0 HOH
 6.445
 N
 O
TYR B:26 B:26 182.0 0.791 T -49.8 131.9 NA NA NA
TYR C:26 C:26 180.0 0.783 T -50.3 127.9 NA NA NA
TYR D:26 D:26 187.0 0.813 T -50.2 127.1 NA NA NA
1ta0 1 Q9GZU7 81.67 4e-109 X-RAY
 2004-08-31 SER A:13 A:88 86.0 0.748 T -52.0 -38.8 86.0 0.748 0.0 HOH
 2.899
 O
 O
3pgl 1 Q9GZU7 81.67 4e-109 X-RAY
 2011-03-09 SER A:12 A:88 70.0 0.609 T -54.2 -31.4 70.0 0.609 0.0 HOH
 2.890
 O
 O
SER B:12 B:88 74.0 0.643 T -32.7 -49.6 NA NA NA
1t9z 1 Q9GZU7 81.11 7e-109 X-RAY
 2004-08-31 SER A:13 A:88 88.0 0.765 T -58.6 -37.9 88.0 0.765 0.0 HOH
 2.767
 OG
 O
2ghq 1 Q9GZU7 81.11 1e-108 X-RAY
 2006-12-05 SER A:13 A:88 86.0 0.748 T -42.9 -30.9 86.0 0.748 0.0 HOH
 3.131
 O
 O
SER B:13 B:88 65.0 0.565 T -54.1 -26.5 NA NA NA
2ght 1 Q9GZU7 81.11 1e-108 X-RAY
 2006-12-05 SER A:13 A:88 76.0 0.661 T -51.7 -48.2 76.0 0.661 0.0 HOH
 2.721
 OG
 O
SER B:13 B:88 76.0 0.661 T -46.6 -43.7 NA NA NA
6du2 1 A0A1S2ZIN9 81.11 1e-108 X-RAY
 2018-09-26 SER A:12 A:88 68.0 0.591 H -62.4 -27.8 68.0 0.591 0.0 HOH
 2.739
 O
 O
SER B:12 B:88 67.0 0.583 T -51.6 -45.4 NA NA NA
6du3 1 Q9GZU7 81.11 1e-108 X-RAY
 2018-09-26 SER A:12 A:88 74.0 0.643 T -62.8 -37.9 74.0 0.643 0.0 HOH
 2.833
 O
 O
SER B:12 B:88 72.0 0.626 T -60.0 -18.7 NA NA NA
4ygy 1 Q9GZU7 80.66 3e-108 X-RAY
 2015-09-16 SER A:16 A:88 71.0 0.617 T -43.4 -37.1 71.0 0.617 0.0 HOH
 3.073
 O
 O
SER B:16 B:88 72.0 0.626 T -65.5 -31.1 NA NA NA
4yh1 1 Q9GZU7 80.66 3e-108 X-RAY
 2015-09-16 SER A:16 A:88 66.0 0.574 T -42.3 -41.8 66.0 0.574 0.0 HOH
 2.763
 O
 O
SER B:16 B:88 66.0 0.574 T -61.3 -31.8 NA NA NA
3l0y 1 Q9GZU7 80.66 4e-108 X-RAY
 2010-03-23 SER A:16 A:88 66.0 0.574 T -62.6 -24.0 66.0 0.574 0.0 HOH
 2.804
 O
 O
SER B:16 B:88 71.0 0.617 T -52.6 -29.4 NA NA NA
3l0b 1 Q9GZU7 80.66 4e-108 X-RAY
 2010-03-23 SER A:16 A:88 74.0 0.643 T -67.2 -18.3 74.0 0.643 0.0 HOH
 2.783
 O
 O
SER B:16 B:88 78.0 0.678 T -39.4 -41.0 NA NA NA
3l0c 1 Q9GZU7 80.66 4e-108 X-RAY
 2010-03-23 SER A:16 A:88 76.0 0.661 H -62.0 -23.8 76.0 0.661 0.0 HOH
 2.709
 O
 O
SER B:16 B:88 80.0 0.696 T -56.4 -28.7 NA NA NA
2q5e 1 O14595 82.12 3e-104 X-RAY
 2007-06-19 GLN A:15 A:99 136.0 0.756 T -27.7 -62.0 136.0 0.756 0.0 HOH
 6.062
 N
 O
GLN B:15 B:99 122.0 0.678 T -39.4 -54.4 NA NA NA
GLN C:15 C:99 140.0 0.778 T -35.2 -64.0 NA NA NA
GLN D:15 D:99 130.0 0.722 T -41.1 -40.5 NA NA NA
GLN E:15 E:99 150.0 0.833 T 16.6 -77.1 NA NA NA
GLN F:15 F:99 147.0 0.817 T -42.3 -51.8 NA NA NA
GLN G:15 G:99 136.0 0.756 T -6.6 -77.8 NA NA NA
GLN H:15 H:99 133.0 0.739 T -42.3 -52.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o15194-f1 1 O15194 100.0 0.0 TYR A:104 A:104 204.0 0.887 T -57.6 125.0