Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 38006111 . A C CCDS33734.1:NM_001008392.1:c.317aAg>aCg_NP_001008393.1:p.106K>T Homo sapiens CTD small phosphatase like (CTDSPL), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2hhl 1 O15194 100.0 5e-134 X-RAY
 2006-08-29 LYS A:28 A:28 65.0 0.325 -114.1 133.0 65.0 0.325 0.0 HOH
 3.141
 NZ
 O
LYS B:28 B:28 67.0 0.335 -87.5 147.3 NA NA NA
LYS C:28 C:28 64.0 0.32 S -65.7 150.2 NA NA NA
LYS D:28 D:28 67.0 0.335 -69.4 143.4 NA NA NA
1ta0 1 Q9GZU7 81.67 4e-109 X-RAY
 2004-08-31 LYS A:15 A:90 58.0 0.29 S -96.6 156.7 58.0 0.29 0.0 HOH
 2.741
 O
 O
3pgl 1 Q9GZU7 81.67 4e-109 X-RAY
 2011-03-09 LYS A:14 A:90 52.0 0.26 S -85.8 157.8 52.0 0.26 0.0 HOH
 2.767
 O
 O
LYS B:14 B:90 58.0 0.29 S -100.8 154.3 NA NA NA
1t9z 1 Q9GZU7 81.11 7e-109 X-RAY
 2004-08-31 LYS A:15 A:90 56.0 0.28 S -101.2 153.2 56.0 0.28 0.0 HOH
 2.720
 O
 O
2ghq 1 Q9GZU7 81.11 1e-108 X-RAY
 2006-12-05 LYS A:15 A:90 59.0 0.295 S -93.0 156.5 59.0 0.295 0.0 HOH
 2.710
 O
 O
LYS B:15 B:90 51.0 0.255 S -90.3 157.7 NA NA NA
2ght 1 Q9GZU7 81.11 1e-108 X-RAY
 2006-12-05 LYS A:15 A:90 61.0 0.305 S -96.2 152.4 61.0 0.305 0.0 HOH
 2.751
 O
 O
LYS B:15 B:90 50.0 0.25 S -91.0 156.8 NA NA NA
6du2 1 A0A1S2ZIN9 81.11 1e-108 X-RAY
 2018-09-26 LYS A:14 A:90 49.0 0.245 S -83.2 158.0 49.0 0.245 0.0 HOH
 2.792
 O
 O
LYS B:14 B:90 61.0 0.305 S -91.4 149.1 NA NA NA
6du3 1 Q9GZU7 81.11 1e-108 X-RAY
 2018-09-26 LYS A:14 A:90 50.0 0.25 S -82.6 161.0 50.0 0.25 0.0 HOH
 2.612
 O
 O
LYS B:14 B:90 60.0 0.3 S -109.5 147.3 NA NA NA
4ygy 1 Q9GZU7 80.66 3e-108 X-RAY
 2015-09-16 LYS A:18 A:90 59.0 0.295 S -110.8 145.9 59.0 0.295 0.0 HOH
 2.733
 O
 O
LYS B:18 B:90 50.0 0.25 S -80.7 152.4 NA NA NA
4yh1 1 Q9GZU7 80.66 3e-108 X-RAY
 2015-09-16 LYS A:18 A:90 60.0 0.3 S -100.4 150.2 60.0 0.3 0.0 HOH
 2.675
 O
 O
LYS B:18 B:90 52.0 0.26 S -81.7 154.5 NA NA NA
3l0y 1 Q9GZU7 80.66 4e-108 X-RAY
 2010-03-23 LYS A:18 A:90 53.0 0.265 S -87.4 157.0 53.0 0.265 0.0 HOH
 2.438
 NZ
 O
LYS B:18 B:90 59.0 0.295 S -93.5 152.3 NA NA NA
3l0b 1 Q9GZU7 80.66 4e-108 X-RAY
 2010-03-23 LYS A:18 A:90 50.0 0.25 S -89.7 158.5 50.0 0.25 0.0 HOH
 2.356
 NZ
 O
LYS B:18 B:90 62.0 0.31 S -91.5 144.8 NA NA NA
3l0c 1 Q9GZU7 80.66 4e-108 X-RAY
 2010-03-23 LYS A:18 A:90 45.0 0.225 S -94.8 160.4 45.0 0.225 0.0 HOH
 2.998
 O
 O
LYS B:18 B:90 49.0 0.245 S -91.8 150.0 NA NA NA
2q5e 1 O14595 82.12 3e-104 X-RAY
 2007-06-19 ARG A:17 A:101 64.0 0.284 -93.1 149.4 64.0 0.284 0.0 HOH
 3.194
 O
 O
ARG B:17 B:101 64.0 0.284 -92.5 146.5 NA NA NA
ARG C:17 C:101 68.0 0.302 -95.1 149.0 NA NA NA
ARG D:17 D:101 85.0 0.378 S -74.4 156.3 NA NA NA
ARG E:17 E:101 68.0 0.302 -97.2 153.1 NA NA NA
ARG F:17 F:101 77.0 0.342 -90.5 158.3 NA NA NA
ARG G:17 G:101 64.0 0.284 -95.6 133.0 NA NA NA
ARG H:17 H:101 83.0 0.369 -96.0 155.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o15194-f1 1 O15194 100.0 0.0 LYS A:106 A:106 60.0 0.3 -77.2 153.3