Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 57561313 . T A CCDS2884.1:NM_001660.3:c.418Aca>Tca_NP_001651.1:p.140T>S Homo sapiens ADP ribosylation factor 4 (ARF4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1z6x 1 P18085 100.0 5e-133 X-RAY
 2005-04-12 THR A:140 A:140 14.0 0.1 H -64.6 -49.7 14.0 0.1 0.0 HOH
 2.514
 OG1
 O
THR B:140 B:140 9.0 0.064 H -48.4 -42.4 NA NA NA
2b6h 1 P84085 90.8 5e-119 X-RAY
 2005-10-11 THR A:152 A:140 23.0 0.164 H -55.8 -44.1 23.0 0.164 0.0 UNX
HOH
 9.428
2.766
 CG2
OG1
 UNK
O
3aq4 1 P36397 80.56 1e-109 X-RAY
 2011-01-26 THR A:143 A:140 8.0 0.057 H -56.6 -49.8 8.0 0.057 0.0 HOH
 2.846
 O
 O
THR B:143 B:140 12.0 0.086 H -53.6 -50.8 NA NA NA
1r8q 1 P84080 81.92 2e-108 X-RAY
 2004-01-20 THR A:140 A:140 8.0 0.057 H -58.9 -41.1 8.0 0.057 0.0 HOH
 2.961
 O
 O
THR C:140 B:140 10.0 0.071 H -57.5 -38.8 NA NA NA
1rrf 1 P84079 81.92 2e-108 X-RAY
 1996-06-20 THR A:140 A:140 10.0 0.071 T -73.9 -12.9 10.0 0.071 0.0
1rrg 1 P84079 81.92 2e-108 X-RAY
 1996-06-20 THR A:140 A:140 9.0 0.064 H -58.1 -39.9 9.0 0.064 0.0 HOH
 5.266
 O
 O
THR B:140 B:140 16.0 0.114 H -56.2 -25.8 16.0 0.114 0.0 HOH
 7.963
 CG2
 O
1hur 1 P84077 81.82 2e-107 X-RAY
 1995-07-10 THR A:139 A:140 14.0 0.1 H -58.6 -47.0 14.0 0.1 0.0 HOH
 5.221
 O
 O
THR B:139 B:140 15.0 0.107 H -43.1 -34.5 15.0 0.107 0.0 HOH
 3.035
 OG1
 O
3o47 1 Q8N6T3,P84077 84.94 5e-103 X-RAY
 2010-08-11 THR A:288 A:270 9.0 0.064 H -57.3 -38.2 9.0 0.064 0.0
THR B:288 B:270 9.0 0.064 H -57.2 -39.1 NA NA NA
6ii6 2 P61204 82.53 2e-102 X-RAY
 2019-08-07 THR C:128 C:140 8.0 0.057 H -54.5 -38.8 8.0 0.057 0.0 HOH
 2.720
 O
 O
THR D:128 D:140 11.0 0.079 H -66.0 -22.8 NA NA NA
7mge 4 P84077 84.47 7e-102 EM
 2021-06-23 THR D:126 E:140 27.0 0.193 H -66.6 -30.5 27.0 0.193 0.0
7dn8 2 P84077 82.93 1e-101 X-RAY
 2021-12-15 THR B:128 D:140 9.0 0.064 H -57.8 -37.4 9.0 0.064 0.0 HOH
 2.888
 O
 O
THR D:128 B:140 8.0 0.057 H -57.7 -36.8 NA NA NA
THR F:128 F:140 8.0 0.057 H -57.8 -36.7 NA NA NA
THR H:128 H:140 9.0 0.064 H -57.8 -37.0 NA NA NA
1r8s 1 P84080 85.0 1e-101 X-RAY
 2004-01-20 THR A:123 A:140 13.0 0.093 H -59.0 -43.2 13.0 0.093 0.0 HOH
 2.714
 OG1
 O
1re0 1 P32889 85.0 1e-101 X-RAY
 2003-12-16 THR A:123 A:140 15.0 0.107 H -53.5 -36.2 15.0 0.107 0.0 HOH
 2.676
 O
 O
1s9d 1 P84080 85.0 1e-101 X-RAY
 2004-02-10 THR A:123 A:140 9.0 0.064 H -58.6 -47.9 9.0 0.064 0.0 HOH
 2.785
 OG1
 O
1u81 1 P84077 85.0 1e-101 NMR
 2004-10-05 THR A:123 A:140 45.0 0.321 G -93.9 26.0 45.0 0.321 0.0
4c0a 2 P84080 85.0 1e-101 X-RAY
 2013-09-25 THR C:123 C:140 8.0 0.057 H -54.1 -46.6 NA NA NA
THR D:123 D:140 8.0 0.057 H -54.3 -46.3 NA NA NA
THR G:123 G:140 9.0 0.064 H -53.8 -46.7 9.0 0.064 0.0
THR H:123 H:140 14.0 0.1 H -54.1 -46.5 NA NA NA
6fae 2 P84077 83.95 4e-101 X-RAY
 2018-01-17 THR B:172 B:140 14.0 0.1 H -59.5 -37.8 14.0 0.1 0.0 HOH
 2.491
 O
 O
4hmy 5 P84077 83.85 2e-100 X-RAY
 2013-03-06 THR E:131 C:140 7.0 0.05 H -51.4 -39.1 7.0 0.05 0.0
6cri 3 P84077 83.85 2e-100 EM
 2018-08-01 THR C:124 C:140 12.0 0.086 H -65.0 -48.5 12.0 0.086 0.0
THR E:124 H:140 10.0 0.071 H -59.1 -43.4 10.0 0.071 0.0
THR K:124 K:140 12.0 0.086 H -64.0 -45.5 12.0 0.086 0.0
THR M:124 U:140 9.0 0.064 H -59.6 -45.5 9.0 0.064 0.0
THR S:124 L:140 13.0 0.093 H -64.4 -45.4 13.0 0.093 0.0
THR U:124 V:140 12.0 0.086 H -62.6 -45.1 12.0 0.086 0.0
7dn9 2 P84077 83.85 2e-100 X-RAY
 2021-12-15 THR B:124 B:140 10.0 0.071 H -62.0 -31.4 10.0 0.071 0.0
THR D:124 D:140 8.0 0.057 H -62.4 -31.6 NA NA NA
THR F:124 F:140 9.0 0.064 H -62.2 -32.3 NA NA NA
THR H:124 H:140 8.0 0.057 H -62.1 -31.5 NA NA NA
1j2j 1 Q8BSL7 84.38 3e-100 X-RAY
 2003-05-06 THR A:125 A:140 9.0 0.064 H -54.8 -47.3 9.0 0.064 0.0 HOH
 2.838
 OG1
 O
1o3y 1 P84078 84.38 3e-100 X-RAY
 2003-05-20 THR A:125 A:140 8.0 0.057 H -53.3 -46.7 8.0 0.057 0.0 HOH
 2.887
 OG1
 O
THR B:125 B:140 8.0 0.057 H -54.5 -48.8 NA NA NA
2j59 1 P84078 84.38 3e-100 X-RAY
 2007-02-20 THR A:125 A:140 16.0 0.114 H -51.6 -45.8 16.0 0.114 0.0 DIO
HOH
 5.825
3.109
 OG1
O
 C2'
O
THR B:125 B:140 15.0 0.107 H -55.6 -47.0 NA NA NA
THR C:125 C:140 15.0 0.107 H -49.6 -47.6 NA NA NA
THR D:125 D:140 14.0 0.1 H -51.7 -48.6 NA NA NA
THR E:125 E:140 14.0 0.1 H -52.0 -47.6 NA NA NA
THR F:125 F:140 16.0 0.114 H -50.9 -47.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p18085-f1 1 P18085 100.0 2e-133 THR A:140 A:140 13.0 0.093 H -60.4 -40.8
af-p84085-f1 1 P84085 90.0 2e-123 THR A:140 A:140 10.0 0.071 H -59.8 -43.9
af-p84077-f1 1 P84077 81.92 1e-108 THR A:140 A:140 11.0 0.079 H -56.6 -47.0