Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 57563069 . C A CCDS2884.1:NM_001660.3:c.304Gaa>Taa_NP_001651.1:p.102E>* Homo sapiens ADP ribosylation factor 4 (ARF4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1z6x 1 P18085 100.0 5e-133 X-RAY
 2005-04-12 GLU A:102 A:102 57.0 0.3 H -60.3 -38.4 57.0 0.3 0.0 HOH
 4.778
 OE2
 O
GLU B:102 B:102 61.0 0.321 H -55.3 -39.7 NA NA NA
2b6h 1 P84085 90.8 5e-119 X-RAY
 2005-10-11 GLU A:114 A:102 74.0 0.389 H -59.6 -45.4 74.0 0.389 0.0 UNX
UNX
HOH
 7.241
6.884
2.752
 C
C
OE1
 UNK
UNK
O
3aq4 1 P36397 80.56 1e-109 X-RAY
 2011-01-26 GLU A:105 A:102 74.0 0.389 H -61.9 -41.0 74.0 0.389 0.0 HOH
 2.575
 OE1
 O
GLU B:105 B:102 70.0 0.368 H -57.6 -41.7 NA NA NA
1r8q 1 P84080 81.92 2e-108 X-RAY
 2004-01-20 GLU A:102 A:102 107.0 0.563 H -62.4 -39.1 107.0 0.563 0.0 HOH
 2.690
 OE1
 O
GLU C:102 B:102 86.0 0.453 H -61.3 -37.9 NA NA NA
1rrf 1 P84079 81.92 2e-108 X-RAY
 1996-06-20 GLU A:102 A:102 84.0 0.442 H -70.8 -37.9 84.0 0.442 0.0
1rrg 1 P84079 81.92 2e-108 X-RAY
 1996-06-20 GLU A:102 A:102 78.0 0.411 H -76.1 -44.4 78.0 0.411 0.0 HOH
 3.695
 N
 O
GLU B:102 B:102 84.0 0.442 H -77.3 -40.8 84.0 0.442 0.0 HOH
 3.145
 CG
 O
1hur 1 P84077 81.82 2e-107 X-RAY
 1995-07-10 GLU A:101 A:102 61.0 0.321 H -84.7 -27.9 61.0 0.321 0.0 HOH
 4.388
 OE2
 O
GLU B:101 B:102 58.0 0.305 H -55.1 -36.2 58.0 0.305 0.0 HOH
 3.471
 N
 O
3o47 1 Q8N6T3,P84077 84.94 5e-103 X-RAY
 2010-08-11 GLU A:250 A:232 75.0 0.395 H -61.8 -45.8 75.0 0.395 0.0
GLU B:250 B:232 75.0 0.395 H -61.3 -46.3 NA NA NA
6ii6 2 P61204 82.53 2e-102 X-RAY
 2019-08-07 GLU C:90 C:102 72.0 0.379 H -62.6 -45.2 72.0 0.379 0.0 HOH
 2.522
 OE1
 O
GLU D:90 D:102 57.0 0.3 H -63.2 -49.1 NA NA NA
7mge 4 P84077 84.47 7e-102 EM
 2021-06-23 GLU D:88 E:102 98.0 0.516 H -63.6 -41.3 98.0 0.516 0.0
7dn8 2 P84077 82.93 1e-101 X-RAY
 2021-12-15 GLU B:90 D:102 87.0 0.458 H -57.1 -43.9 87.0 0.458 0.0 HOH
 3.459
 OE1
 O
GLU D:90 B:102 89.0 0.468 H -56.9 -44.2 NA NA NA
GLU F:90 F:102 88.0 0.463 H -57.1 -44.1 NA NA NA
GLU H:90 H:102 81.0 0.426 H -57.1 -43.5 NA NA NA
1r8s 1 P84080 85.0 1e-101 X-RAY
 2004-01-20 GLU A:85 A:102 85.0 0.447 H -61.4 -41.2 85.0 0.447 0.0 HOH
 2.604
 OE2
 O
1re0 1 P32889 85.0 1e-101 X-RAY
 2003-12-16 GLU A:85 A:102 77.0 0.405 H -65.6 -39.4 77.0 0.405 0.0 HOH
 4.177
 OE2
 O
1s9d 1 P84080 85.0 1e-101 X-RAY
 2004-02-10 GLU A:85 A:102 90.0 0.474 H -68.3 -32.4 90.0 0.474 0.0 HOH
 2.469
 OE1
 O
1u81 1 P84077 85.0 1e-101 NMR
 2004-10-05 GLU A:85 A:102 44.0 0.232 H -56.0 -36.1 44.0 0.232 0.0 GDP
 9.860
 OE2
 O3B
4c0a 2 P84080 85.0 1e-101 X-RAY
 2013-09-25 GLU C:85 C:102 71.0 0.374 H -63.0 -41.1 NA NA NA
GLU D:85 D:102 70.0 0.368 H -63.4 -41.2 NA NA NA
GLU G:85 G:102 73.0 0.384 H -63.6 -41.2 73.0 0.384 0.0
GLU H:85 H:102 73.0 0.384 H -63.3 -41.1 NA NA NA
6fae 2 P84077 83.95 4e-101 X-RAY
 2018-01-17 GLU B:134 B:102 90.0 0.474 H -76.5 -26.1 90.0 0.474 0.0 HOH
 3.318
 N
 O
4hmy 5 P84077 83.85 2e-100 X-RAY
 2013-03-06 GLU E:93 C:102 59.0 0.311 H -60.5 -34.6 59.0 0.311 0.0
6cri 3 P84077 83.85 2e-100 EM
 2018-08-01 GLU C:86 C:102 65.0 0.342 H -72.7 -20.6 65.0 0.342 0.0
GLU E:86 H:102 70.0 0.368 H -71.2 -24.9 70.0 0.368 0.0
GLU K:86 K:102 66.0 0.347 H -76.1 -23.5 66.0 0.347 0.0
GLU M:86 U:102 76.0 0.4 H -65.2 -28.8 76.0 0.4 0.0
GLU S:86 L:102 63.0 0.332 H -79.1 -17.1 63.0 0.332 0.0
GLU U:86 V:102 68.0 0.358 H -70.4 -27.2 68.0 0.358 0.0
7dn9 2 P84077 83.85 2e-100 X-RAY
 2021-12-15 GLU B:86 B:102 90.0 0.474 H -57.8 -42.3 90.0 0.474 0.0
GLU D:86 D:102 89.0 0.468 H -57.6 -42.7 NA NA NA
GLU F:86 F:102 87.0 0.458 H -57.7 -42.7 NA NA NA
GLU H:86 H:102 89.0 0.468 H -58.6 -42.6 NA NA NA
1j2j 1 Q8BSL7 84.38 3e-100 X-RAY
 2003-05-06 GLU A:87 A:102 68.0 0.358 H -61.0 -39.1 68.0 0.358 0.0 HOH
 2.689
 OE1
 O
1o3y 1 P84078 84.38 3e-100 X-RAY
 2003-05-20 GLU A:87 A:102 57.0 0.3 H -61.0 -42.9 57.0 0.3 0.0 HOH
 2.987
 N
 O
GLU B:87 B:102 47.0 0.247 H -59.3 -46.5 NA NA NA
2j59 1 P84078 84.38 3e-100 X-RAY
 2007-02-20 GLU A:87 A:102 66.0 0.347 H -58.5 -44.9 66.0 0.347 0.0 HOH
 2.712
 OE2
 O
GLU B:87 B:102 65.0 0.342 H -60.2 -41.4 NA NA NA
GLU C:87 C:102 61.0 0.321 H -62.1 -45.5 NA NA NA
GLU D:87 D:102 59.0 0.311 H -62.1 -41.7 NA NA NA
GLU E:87 E:102 57.0 0.3 H -61.7 -41.8 NA NA NA
GLU F:87 F:102 67.0 0.353 H -61.6 -45.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p18085-f1 1 P18085 100.0 2e-133 GLU A:102 A:102 52.0 0.274 H -62.6 -39.6
af-p84085-f1 1 P84085 90.0 2e-123 GLU A:102 A:102 50.0 0.263 H -59.1 -40.8
af-p84077-f1 1 P84077 81.92 1e-108 GLU A:102 A:102 50.0 0.263 H -62.6 -41.7